# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1vj7A	393	2.59e-20	a.211.1.1,d.218.1.8	100801,100802
2qgsA	225	0.3406	a.211.1.1	150782
2gz4A	207	0.5514	a.211.1.1	147196
2ogiA	196	0.5912		
3b57A	209	0.7283	a.211.1.1	154835
3ccgA	190	3.072		
2o08A	188	3.116		
1xjjA	644	3.480		
3kh1A	200	4.179		
2parA	201	7.570		
3ljxA	288	11.06		
2pq7A	220	12.25	a.211.1.1	149786
2k9mA	130	12.95		
2iyvA	184	14.73	c.37.1.2	137812
2z0qA	346	15.32		
1khdA	345	16.47	a.46.2.1,c.27.1.1	77400,77401
3mzoA	216	18.17		
3khpA	311	24.22		
1ynbA	173	25.52	a.211.1.1	123718
2bv6A	142	27.45	a.4.5.28	146218
3memA	457	28.98		
1xx7A	184	30.31	a.211.1.1	116143
3f3kA	265	30.87		
3ju7A	377	31.65		
2x0lB	133	34.09		
2x58A	727	35.21		
2kh9A	92	36.04		
1z91A	147	38.04	a.4.5.28	124736
2h12A	436	39.87		
1vqrA	297	40.16	a.211.1.3	114015
3m5fA	244	41.03		
1ee5A	424	47.27	a.118.1.1	19132
3g7dA	443	48.34		
3cjnA	162	49.08		
3e7qA	215	50.37		
1txdA	385	53.52	a.87.1.1,b.55.1.1	107422,107423
1csh	435	55.06		
3e6mA	161	55.07		
1ct9A	553	55.31	c.26.2.1,d.153.1.1	31616,41834
3d2wA	89	55.62		
1p9qC	256	62.09	a.5.8.1,d.235.1.2,d.58.11.3	104093,104094,104095
1ee4A	423	62.13	a.118.1.1	19128
3hsrA	140	62.53		
3kndA	460	62.73		
1cshA	435	65.88	a.103.1.1	18880
3do8A	148	66.16		
2dfkA	402	68.56	a.87.1.1,b.55.1.1	145077,145078
2au3A	407	68.84		
2ekdA	207	69.43		
2ifcA	385	69.71		
1jgsA	138	69.84	a.4.5.28	66683
1uddA	226	71.19	a.132.1.3	107776
3egnA	143	71.80		
2isnA	364	76.26		
3k2gA	364	76.70		
2pw6A	271	77.03	c.56.6.1	149895
1on2A	142	79.71	a.4.5.24,a.76.1.1	87103,87104
2pexA	153	80.25		
1xi9A	406	80.31	c.67.1.1	115355
1lt8A	406	82.85	c.1.26.1	78186