# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1vj7A	393	1.72e-21	a.211.1.1,d.218.1.8	100801,100802
2gz4A	207	0.2068	a.211.1.1	147196
3b57A	209	0.4914	a.211.1.1	154835
2qgsA	225	0.5184	a.211.1.1	150782
2ogiA	196	0.5703		
3ccgA	190	2.873		
2o08A	188	3.312		
1xjjA	644	4.168		
2parA	201	4.561		
3kh1A	200	5.423		
3ljxA	288	7.487		
2pq7A	220	11.02	a.211.1.1	149786
2z0qA	346	12.71		
2k9mA	130	13.04		
3memA	457	15.06		
1ynbA	173	17.68	a.211.1.1	123718
1khdA	345	17.78	a.46.2.1,c.27.1.1	77400,77401
3khpA	311	18.22		
2bv6A	142	19.66	a.4.5.28	146218
2x58A	727	22.45		
3e7qA	215	24.18		
2h12A	436	25.08		
3f3kA	265	26.46		
2iyvA	184	28.23	c.37.1.2	137812
1vqrA	297	30.52	a.211.1.3	114015
2ifcA	385	31.80		
3cjnA	162	34.16		
2x0lB	133	37.28		
1ee4A	423	37.68	a.118.1.1	19128
1csh	435	39.64		
1ee5A	424	40.33	a.118.1.1	19132
3e6mA	161	40.65		
1xx7A	184	42.77	a.211.1.1	116143
1sxjC	340	43.39	a.80.1.1,c.37.1.20	106085,106086
2ekdA	207	44.47		
1lt8A	406	44.89	c.1.26.1	78186
2au3A	407	45.52		
1z91A	147	46.27	a.4.5.28	124736
1ct9A	553	47.88	c.26.2.1,d.153.1.1	31616,41834
3do8A	148	49.96		
2dfkA	402	50.49	a.87.1.1,b.55.1.1	145077,145078
1uddA	226	51.65	a.132.1.3	107776
1cshA	435	53.05	a.103.1.1	18880
3g7dA	443	53.37		
3hsrA	140	53.91		
2kh9A	92	54.74		
1xi9A	406	56.41	c.67.1.1	115355
1p4xA	250	56.75	a.4.5.28,a.4.5.28	87784,87785
3d2wA	89	58.33		
1txdA	385	58.51	a.87.1.1,b.55.1.1	107422,107423
1p9qC	256	60.24	a.5.8.1,d.235.1.2,d.58.11.3	104093,104094,104095
2pw6A	271	64.21	c.56.6.1	149895
3kndA	460	64.51		
3mzoA	216	67.37		
1za0A	275	68.77	a.25.1.2	124774
3bpvA	138	72.76		
1jdhA	529	73.09	a.118.1.1	66549
3m5fA	244	74.93		
3igxA	324	79.39		
3m1tA	275	84.69		
1jgsA	138	85.21	a.4.5.28	66683
2dqbA	376	85.32		
2pexA	153	86.84		
2qwwA	154	88.73		
2isnA	364	89.80