# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vj7A 393 3.97e-12 a.211.1.1,d.218.1.8 100801,100802 2ovyA 362 2.525 1uozA 315 2.658 c.6.1.1 113354 1yxaA 398 3.132 2qugA 394 3.770 1qlpA 394 4.168 e.1.1.1 42628 3lxgA 308 5.874 3dlwA 411 6.191 2v95A 371 8.643 2gz4A 207 9.141 a.211.1.1 147196 2rivA 343 9.203 2vdxA 373 9.465 3ljxA 288 9.836 2qgsA 225 9.903 a.211.1.1 150782 3ituA 345 12.55 2cycA 375 12.64 1n0wA 243 13.88 c.37.1.11 79772 1pt6A 213 15.07 c.62.1.1 95091 2a35A 215 16.05 c.2.1.2 126072 1oywA 523 17.55 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2h56A 233 18.36 2i1qA 322 19.03 a.60.4.1,c.37.1.11 136984,136985 1v7pC 200 19.21 c.62.1.1 108408 2dbbA 151 19.43 3c3yA 237 21.05 2pefA 373 21.12 2ousA 331 21.22 1jmoA 480 21.25 e.1.1.1 77138 2dm6A 333 21.31 b.35.1.2,c.2.1.1 131567,131568 3ed1A 365 21.32 2nx9A 464 24.72 1sxjC 340 26.60 a.80.1.1,c.37.1.20 106085,106086 3kndA 460 27.86 2hd1A 326 28.86 a.211.1.2 136338 1din 236 29.14 1fiuA 286 29.40 c.52.1.10 33317 1n3yA 198 29.66 c.62.1.1 79976 3b57A 209 30.51 a.211.1.1 154835 1tbfA 347 31.31 a.211.1.2 106743 2pt7A 330 32.03 c.37.1.11 149834 3le2A 393 32.27 2iu4A 336 32.83 1ouvA 273 33.00 a.118.18.1 93570 2o3bB 136 34.30 d.221.1.1 138902 1yzyA 413 38.09 c.146.1.1 124292 1y2kA 349 38.37 a.211.1.2 122571 3l9sA 191 39.21 2o0uA 364 39.25 d.144.1.7 138868 1a76 326 39.52 3hazA 1001 39.66 3b9fI 395 42.59 2ia0A 171 42.89 3lc0A 456 43.19 3gwqA 426 43.94 1wu7A 434 43.96 c.51.1.1,d.104.1.1 121275,121276 2eezA 369 44.10 3feyC 467 44.32 3k09A 519 45.01 2w96A 271 45.10 1a79A 171 45.21 c.52.2.1,d.75.1.1 33340,39739 2reiA 318 45.52 1z1lA 345 45.61 3hc8A 324 46.10 1mtpA 323 47.18 e.1.1.1 85107 2dy3A 361 48.15 1nlfA 279 48.60 c.37.1.11 85850 1y8cA 246 48.78 c.66.1.43 116563 3kw3A 376 49.46 1k47A 337 49.70 d.14.1.5,d.58.26.4 72040,72041 2q4uA 272 49.78 1g6oA 330 50.16 c.37.1.11 32430 2weyA 343 51.04 3bz6A 183 51.98 a.4.5.75,a.4.5.75 155739,155740 2rd7A 367 52.71 2v9dA 343 53.99 3k0aA 519 54.52 3b8iA 287 54.71 3berA 249 55.54 2zsiA 351 56.05 3k85A 357 56.37 1f74A 293 56.59 c.1.10.1 29079 3lerA 301 56.81 3eljA 369 57.26 1a76A 326 57.54 a.60.7.1,c.120.1.2 18091,33361 2ashA 381 58.36 1m5wA 243 59.38 c.1.24.1 84836 3eufA 328 60.15 1rhcA 330 60.62 c.1.16.3 97468 2zb4A 357 60.65 2o0jA 385 61.50 2cvhA 220 61.78 1k20A 310 62.08 c.107.1.1 68027 2b1pA 355 63.00 d.144.1.7 127672 2pulA 397 63.98 d.144.1.6 149865 1sekA 378 64.32 e.1.1.1 42675 3f5xB 256 65.20 2pq7A 220 65.21 a.211.1.1 149786 1fgkA 310 65.26 d.144.1.7 41693 1m3uA 264 65.42 c.1.12.8 84784 3hrjA 439 66.62 3ljvA 283 67.57 1pmnA 364 68.57 d.144.1.7 94907 2qgqA 304 69.68 3ks6A 250 69.83 3i4pA 162 70.30 1jpaA 312 70.93 d.144.1.7 67011 1xrsA 516 71.08 c.1.19.4 115883 2qrlA 394 71.27 3gykA 175 72.30 2p8tA 200 72.40 a.4.5.72,d.74.4.2 149315,149316 2oayA 391 72.53 3gqcA 504 73.43 2pn6A 150 73.65 2db1A 118 74.11 1bjaA 95 74.75 a.4.5.9 16122 2a5hA 416 75.65 1d4aA 273 75.95 c.23.5.3 31219 2pljA 419 76.41 2zj8A 720 77.67 3llwA 311 78.99 3dynA 329 79.34 a.211.1.2 157942 2vwxA 302 79.84 1k2pA 263 79.85 d.144.1.7 72012 1fvkA 189 80.81 c.47.1.13 90351 2w69A 216 82.58 3fsuA 304 83.92 3hurA 395 84.18 2vh4A 381 84.40 2eqaA 352 84.98 2w0mA 235 85.03 3ecmA 338 85.93 1mbaA 146 86.44 a.1.1.2 15149 2p5vA 162 86.78 1ee4A 423 87.64 a.118.1.1 19128 3l4mA 373 89.05