# List of top-scoring protein chains for T0615.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vj7A 393 8.79e-21 a.211.1.1,d.218.1.8 100801,100802 3djbA 223 1.015 a.211.1.1 157756 2pjqA 231 1.745 a.211.1.1 149569 2qgsA 225 1.946 a.211.1.1 150782 3dtoA 223 5.651 a.211.1.1 157850 2olpA 152 20.42 1zvnA 99 27.25 2a4eA 215 48.47 1vi6A 208 50.11 c.23.15.1 100736 2gz4A 207 64.86 a.211.1.1 147196 2ivfB 352 88.81