# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1vj7A	393	1.49e-21	a.211.1.1,d.218.1.8	100801,100802
2ogiA	196	0.2499		
2qgsA	225	0.3608	a.211.1.1	150782
3b57A	209	0.5483	a.211.1.1	154835
2gz4A	207	0.5543	a.211.1.1	147196
2o08A	188	0.6696		
2pq7A	220	0.9700	a.211.1.1	149786
1vqrA	297	1.883	a.211.1.3	114015
1ynbA	173	2.214	a.211.1.1	123718
3kh1A	200	2.905		
3m1tA	275	3.235		
2pw6A	271	4.767	c.56.6.1	149895
1xjjA	644	7.039		
1bouB	302	8.497	c.56.6.1	33859
3memA	457	9.212		
2a61A	145	9.566	a.4.5.28	126187
1xx7A	184	11.32	a.211.1.1	116143
3ccgA	190	11.45		
2wghA	676	11.85		
2ax8A	256	12.93		
3bddA	142	12.96		
2k9mA	130	13.40		
1lnwA	147	15.21	a.4.5.28	78104
2ax6A	256	15.86	a.123.1.1	127479
1lj9A	144	16.15	a.4.5.28	78035
3kd6A	313	16.80		
2bodX	286	17.78	c.6.1.1	128909
2frhA	127	18.11	a.4.5.28	133988
3kp7A	151	18.48		
3g3zA	145	18.92		
1ihp	438	19.94		
1t7rA	269	20.43	a.123.1.1	106635
3dnfA	297	20.75		
2ethA	154	21.40	a.4.5.28	132358
1xg7A	250	21.93	a.96.1.6	115281
2dqbA	376	22.58		
3ljxA	288	23.64		
2fbiA	142	24.83	a.4.5.28	133246
1larA	575	25.95	c.45.1.2,c.45.1.2	32693,32694
1jjvA	206	26.58	c.37.1.1	71698
3hx0A	335	27.45		
1grx	85	27.89		
2h09A	155	28.73		
2parA	201	30.84		
2bogX	286	31.07		
1sr7A	259	31.41	a.123.1.1	105957
3i7aA	281	33.48		
3cjnA	162	34.32		
1snlA	103	35.32	a.39.1.7	105820
3f0zA	292	35.50		
1yoyA	175	35.56	a.211.1.1	123795
1tv9A	335	36.55	a.60.6.1,a.60.12.1,d.218.1.2	112675,112676,112677
1z91A	147	38.28	a.4.5.28	124736
1cshA	435	39.18	a.103.1.1	18880
3f10A	292	40.15		
3bpvA	138	41.39		
3bczA	293	42.19		
3cz1A	119	45.77		
3c8tA	451	47.56		
1a28A	256	48.35	a.123.1.1	19290
1chmA	401	53.20	c.55.2.1,d.127.1.1	33545,41142
2bvwA	362	53.79	c.6.1.1	30666
3lypA	215	53.80		
1oc7A	364	54.17	c.6.1.1	86794
2x58A	727	58.70		
1on2A	142	58.98	a.4.5.24,a.76.1.1	87103,87104
1jgsA	138	60.54	a.4.5.28	66683
2fbhA	146	61.25	a.4.5.28	133245
2x5bA	761	61.51		
3cf4G	170	64.10		
2paqA	201	65.68	a.211.1.1	139643
3hbcA	320	65.98		
2x1yA	761	65.99		
2isnA	364	67.01		
2xapA	761	68.08		
2jzbB	74	69.90		
3cjpA	272	71.07		
1p9qC	256	73.50	a.5.8.1,d.235.1.2,d.58.11.3	104093,104094,104095
2wtbA	725	75.44		
3jw4A	148	76.06		
3gtdA	482	76.55		
2yukA	90	79.94		
2aaxA	275	80.52		
1eg5A	384	81.19	c.67.1.3	34429
1hm9A	468	82.31	b.81.1.4,c.68.1.5	65866,65867
1auiB	169	82.47	a.39.1.5	17325
2x75A	431	83.10		
2avdA	219	84.34	c.66.1.1	127377
2c1mA	424	84.35		
1ee4A	423	85.51	a.118.1.1	19128
2vglB	591	86.07	i.23.1.1	153035
1nxiA	132	88.71	d.58.47.1	86381