# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1vj7A	393	2.63e-22	a.211.1.1,d.218.1.8	100801,100802
2qgsA	225	0.4887	a.211.1.1	150782
3b57A	209	0.6934	a.211.1.1	154835
2ogiA	196	0.8311		
2o08A	188	0.9646		
2gz4A	207	1.229	a.211.1.1	147196
1ynbA	173	2.481	a.211.1.1	123718
1vqrA	297	3.230	a.211.1.3	114015
3m1tA	275	6.701		
2pq7A	220	10.06	a.211.1.1	149786
2pw6A	271	11.59	c.56.6.1	149895
2ax8A	256	12.35		
1xjjA	644	13.08		
1xx7A	184	13.81	a.211.1.1	116143
3ccgA	190	14.25		
2wghA	676	15.13		
3kh1A	200	16.11		
1lnwA	147	18.60	a.4.5.28	78104
2gnoA	305	18.94	a.80.1.1,c.37.1.20	135414,135415
1chmA	401	19.84	c.55.2.1,d.127.1.1	33545,41142
2bodX	286	20.51	c.6.1.1	128909
3memA	457	21.67		
2dqbA	376	21.97		
1t7rA	269	22.10	a.123.1.1	106635
2ax6A	256	23.03	a.123.1.1	127479
1bouB	302	23.44	c.56.6.1	33859
3bddA	142	24.41		
3f10A	292	27.17		
1eg5A	384	28.22	c.67.1.3	34429
1z91A	147	28.51	a.4.5.28	124736
3hbcA	320	29.41		
1lj9A	144	30.26	a.4.5.28	78035
2a61A	145	30.95	a.4.5.28	126187
2ethA	154	31.26	a.4.5.28	132358
3dnfA	297	32.73		
1grx	85	35.17		
1larA	575	35.81	c.45.1.2,c.45.1.2	32693,32694
1ihp	438	36.74		
3kp7A	151	37.78		
3cjnA	162	39.19		
1snlA	103	39.27	a.39.1.7	105820
3kd6A	313	39.58		
2parA	201	39.98		
2h09A	155	41.40		
2frhA	127	41.45	a.4.5.28	133988
3hx0A	335	43.07		
1yoyA	175	43.51	a.211.1.1	123795
1xg7A	250	44.12	a.96.1.6	115281
3f0zA	292	46.85		
1jjvA	206	48.99	c.37.1.1	71698
2fbiA	142	51.32	a.4.5.28	133246
3cz1A	119	52.61		
3i7aA	281	57.18		
3g3zA	145	59.93		
1sr7A	259	64.41	a.123.1.1	105957
2gzxA	265	64.74		
1tv9A	335	67.07	a.60.6.1,a.60.12.1,d.218.1.2	112675,112676,112677
3ljxA	288	68.30		
2bogX	286	69.69		
3lypA	215	70.62		
1dwkA	156	71.67	a.35.1.4,d.72.1.1	17075,39606
1on2A	142	73.17	a.4.5.24,a.76.1.1	87103,87104
2vlbA	251	74.40		
1cshA	435	74.88	a.103.1.1	18880
2gs8A	317	75.65		
2nnnA	140	75.70		
2bv6A	142	75.99	a.4.5.28	146218
1fuiA	591	79.66	b.43.2.1,c.85.1.1	25674,35444
2jzbB	74	81.16		
2c2hA	192	81.97	c.37.1.8	129668
2dgdA	223	85.88		
3fiuA	249	89.84