# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1vj7A	393	9.81e-23	a.211.1.1,d.218.1.8	100801,100802
3b57A	209	0.3553	a.211.1.1	154835
2qgsA	225	0.3794	a.211.1.1	150782
2ogiA	196	0.4513		
2o08A	188	0.7712		
2gz4A	207	1.077	a.211.1.1	147196
1ynbA	173	2.417	a.211.1.1	123718
1vqrA	297	2.430	a.211.1.3	114015
3m1tA	275	4.066		
2pw6A	271	8.059	c.56.6.1	149895
2ax8A	256	9.706		
3memA	457	10.20		
3ccgA	190	10.76		
1xjjA	644	11.05		
1t7rA	269	14.91	a.123.1.1	106635
2ax6A	256	15.11	a.123.1.1	127479
1bouB	302	15.55	c.56.6.1	33859
1xg7A	250	15.62	a.96.1.6	115281
2wghA	676	15.72		
2pq7A	220	16.63	a.211.1.1	149786
2gnoA	305	16.93	a.80.1.1,c.37.1.20	135414,135415
2dqbA	376	17.99		
1xx7A	184	20.42	a.211.1.1	116143
3kh1A	200	20.60		
3f10A	292	20.80		
3dnfA	297	22.49		
2bodX	286	22.87	c.6.1.1	128909
1lnwA	147	24.82	a.4.5.28	78104
3bddA	142	25.17		
1chmA	401	25.94	c.55.2.1,d.127.1.1	33545,41142
1grx	85	26.83		
3cjnA	162	27.09		
3g3zA	145	27.29		
1lj9A	144	28.64	a.4.5.28	78035
1eg5A	384	29.61	c.67.1.3	34429
2parA	201	30.01		
3kp7A	151	33.88		
3f0zA	292	34.25		
2a61A	145	34.45	a.4.5.28	126187
1larA	575	37.28	c.45.1.2,c.45.1.2	32693,32694
3kd6A	313	38.09		
1sr7A	259	39.04	a.123.1.1	105957
1yoyA	175	39.14	a.211.1.1	123795
3hx0A	335	39.27		
1cshA	435	40.37	a.103.1.1	18880
1jjvA	206	41.27	c.37.1.1	71698
3cz1A	119	46.12		
1zb9A	143	48.26		
1z91A	147	50.94	a.4.5.28	124736
2frhA	127	51.80	a.4.5.28	133988
3i7aA	281	52.72		
3hbcA	320	57.91		
3cmgA	667	58.85		
2ethA	154	59.03	a.4.5.28	132358
3bpvA	138	59.59		
1snlA	103	59.63	a.39.1.7	105820
3ljxA	288	60.02		
2h09A	155	60.50		
2gzxA	265	61.36		
2vlbA	251	61.94		
1s4qA	228	63.67	c.37.1.1	98507
3dg9A	248	63.83		
2paqA	201	66.12	a.211.1.1	139643
1ile	821	66.95		
1ee4A	423	71.48	a.118.1.1	19128
1ihp	438	71.93		
2aaxA	275	74.13		
1pbeA	394	74.31	c.3.1.2,d.16.1.2	30338,37869
1on2A	142	75.14	a.4.5.24,a.76.1.1	87103,87104
2fbiA	142	75.39	a.4.5.28	133246
3lypA	215	75.80		
1dwkA	156	76.39	a.35.1.4,d.72.1.1	17075,39606
2k9mA	130	76.46		
2bvwA	362	77.37	c.6.1.1	30666
2bogX	286	78.40		
2pwyA	258	79.22		
1tv9A	335	81.33	a.60.6.1,a.60.12.1,d.218.1.2	112675,112676,112677
2nnnA	140	82.19