# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1vj7A	393	4.02e-21	a.211.1.1,d.218.1.8	100801,100802
2o08A	188	0.4039		
2ogiA	196	1.344		
3b57A	209	1.421	a.211.1.1	154835
1vqrA	297	2.336	a.211.1.3	114015
2qgsA	225	2.553	a.211.1.1	150782
2gz4A	207	3.563	a.211.1.1	147196
2ax8A	256	6.289		
1t7rA	269	7.572	a.123.1.1	106635
3kh1A	200	7.718		
1bpyA	335	8.120	a.60.6.1,a.60.12.1,d.218.1.2	17980,75819,75820
1tv9A	335	8.419	a.60.6.1,a.60.12.1,d.218.1.2	112675,112676,112677
3m1tA	275	8.467		
2parA	201	9.787		
2ax6A	256	9.878	a.123.1.1	127479
2bodX	286	11.83	c.6.1.1	128909
1p9qC	256	11.84	a.5.8.1,d.235.1.2,d.58.11.3	104093,104094,104095
1on2A	142	15.01	a.4.5.24,a.76.1.1	87103,87104
2bvwA	362	16.37	c.6.1.1	30666
1xx7A	184	17.12	a.211.1.1	116143
3hx0A	335	17.44		
3ccgA	190	17.49		
1sr7A	259	17.95	a.123.1.1	105957
2aaxA	275	19.87		
1ynbA	173	20.11	a.211.1.1	123718
2paqA	201	20.30	a.211.1.1	139643
2bogX	286	23.58		
3mzoA	216	24.99		
1lj9A	144	26.84	a.4.5.28	78035
1t95A	240	29.49	a.5.8.1,d.235.1.2,d.58.11.3	106705,106706,106707
2pfkA	320	30.13	c.89.1.1	35577
1oc7A	364	30.20	c.6.1.1	86794
2h09A	155	30.49		
1tml	286	31.02		
3mghA	329	32.37		
3hc1A	305	34.10		
2fmpA	335	36.42	a.60.6.1,a.60.12.1,d.218.1.2	133786,133787,133788
3memA	457	36.55		
3mjdA	232	36.73		
1grx	85	37.28		
1p5dX	463	37.94	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	94138,94139,94140,94141
2a61A	145	38.36	a.4.5.28	126187
1jmsA	381	38.93	a.60.6.1,a.60.12.1,d.218.1.2	66889,75862,75863
1k2yX	463	40.88	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	68063,68064,68065,68066
3i7aA	281	41.30		
3goqA	310	42.32		
2ac2A	309	44.44		
3bddA	142	44.70		
2pq7A	220	47.43	a.211.1.1	149786
3iruA	277	50.28		
1ut9A	609	56.94	a.102.1.2,b.1.18.2	99912,99913
3lypA	215	60.43		
1a28A	256	62.95	a.123.1.1	19290
1tjyA	316	63.38	c.93.1.1	107062
3bb9A	148	65.84	d.17.4.16	155049
2pexA	153	66.16		
3e61A	277	67.14		
2k9mA	130	67.20		
2f5uA	447	68.33		
2ethA	154	68.40	a.4.5.28	132358
1nxiA	132	70.39	d.58.47.1	86381
1eg5A	384	71.33	c.67.1.3	34429
3kbbA	216	73.73		
1pbeA	394	79.25	c.3.1.2,d.16.1.2	30338,37869
3d00A	191	81.59		
2vafA	378	84.83		
1bdb	277	85.26		
2c2hA	192	87.58	c.37.1.8	129668
2p0tA	176	87.81	a.290.1.1	149141
2g40A	224	89.29	c.124.1.7	134575
2acvA	463	89.35	c.87.1.10	146047