# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1vj7A	393	1.78e-19	a.211.1.1,d.218.1.8	100801,100802
2qgsA	225	0.2703	a.211.1.1	150782
2ogiA	196	0.4401		
3b57A	209	0.4480	a.211.1.1	154835
2pq7A	220	0.7369	a.211.1.1	149786
2o08A	188	0.9587		
2gz4A	207	1.002	a.211.1.1	147196
3m1tA	275	4.629		
1ynbA	173	5.357	a.211.1.1	123718
3memA	457	8.029		
3kh1A	200	8.168		
1vqrA	297	9.315	a.211.1.3	114015
1xjjA	644	9.781		
2ax8A	256	10.42		
3ccgA	190	10.65		
1bouB	302	12.56	c.56.6.1	33859
1t7rA	269	17.95	a.123.1.1	106635
2dqbA	376	18.76		
3g3zA	145	19.06		
3hbcA	320	19.12		
1tv9A	335	19.24	a.60.6.1,a.60.12.1,d.218.1.2	112675,112676,112677
1grx	85	19.53		
2bodX	286	22.32	c.6.1.1	128909
2pw6A	271	23.15	c.56.6.1	149895
1lnwA	147	23.47	a.4.5.28	78104
2frhA	127	24.50	a.4.5.28	133988
2ax6A	256	26.40	a.123.1.1	127479
1larA	575	30.25	c.45.1.2,c.45.1.2	32693,32694
1lj9A	144	30.92	a.4.5.28	78035
2k9mA	130	31.32		
3hx0A	335	34.76		
3bczA	293	36.33		
1sr7A	259	37.59	a.123.1.1	105957
3kp7A	151	39.80		
2h09A	155	41.37		
1xx7A	184	42.62	a.211.1.1	116143
1z91A	147	42.90	a.4.5.28	124736
3dnfA	297	43.05		
1oc7A	364	43.77	c.6.1.1	86794
1ihp	438	45.65		
3bpvA	138	46.12		
2bvwA	362	46.92	c.6.1.1	30666
2wghA	676	46.95		
1jjvA	206	46.99	c.37.1.1	71698
3bddA	142	47.40		
1yoyA	175	49.77	a.211.1.1	123795
3cz1A	119	50.89		
2bogX	286	52.48		
3f10A	292	54.12		
1p9qC	256	55.11	a.5.8.1,d.235.1.2,d.58.11.3	104093,104094,104095
3kd6A	313	55.24		
2a61A	145	56.28	a.4.5.28	126187
2gnoA	305	59.48	a.80.1.1,c.37.1.20	135414,135415
2x58A	727	59.54		
3i7aA	281	60.03		
1dwkA	156	61.27	a.35.1.4,d.72.1.1	17075,39606
1l3kA	196	64.22	d.58.7.1,d.58.7.1	73539,73540
3f0zA	292	64.26		
2parA	201	64.79		
1cshA	435	65.07	a.103.1.1	18880
1eg5A	384	65.37	c.67.1.3	34429
1xg7A	250	66.08	a.96.1.6	115281
1zb9A	143	68.35		
2vsgA	358	74.31	h.4.1.1	45780
3cjnA	162	75.48		
2gs8A	317	78.75		
1a28A	256	79.48	a.123.1.1	19290
2hi0A	240	81.16		
2aaxA	275	81.69		
2ethA	154	84.33	a.4.5.28	132358
2pexA	153	84.38		
1ile	821	85.27		
2vunA	386	86.85