# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1vj7A	393	1.28e-19	a.211.1.1,d.218.1.8	100801,100802
2qgsA	225	0.3781	a.211.1.1	150782
3b57A	209	0.7280	a.211.1.1	154835
2ogiA	196	0.8642		
2pq7A	220	0.9104	a.211.1.1	149786
2gz4A	207	1.527	a.211.1.1	147196
2o08A	188	1.799		
1ynbA	173	6.848	a.211.1.1	123718
3m1tA	275	11.21		
1xjjA	644	11.27		
1vqrA	297	11.41	a.211.1.3	114015
3ccgA	190	11.81		
3memA	457	12.79		
2pw6A	271	13.25	c.56.6.1	149895
3kh1A	200	13.58		
1bouB	302	13.66	c.56.6.1	33859
3g3zA	145	14.24		
3bddA	142	18.17		
1larA	575	18.43	c.45.1.2,c.45.1.2	32693,32694
2bodX	286	18.87	c.6.1.1	128909
1lnwA	147	20.14	a.4.5.28	78104
2frhA	127	21.01	a.4.5.28	133988
2k9mA	130	21.38		
1grx	85	22.51		
3bczA	293	23.47		
1jjvA	206	26.88	c.37.1.1	71698
2ax8A	256	27.28		
2a61A	145	27.52	a.4.5.28	126187
3kd6A	313	28.43		
3hbcA	320	30.17		
1ihp	438	30.43		
1lj9A	144	31.38	a.4.5.28	78035
1z91A	147	33.06	a.4.5.28	124736
3bpvA	138	33.61		
3kp7A	151	35.12		
2h09A	155	36.02		
1xg7A	250	36.69	a.96.1.6	115281
1tv9A	335	36.83	a.60.6.1,a.60.12.1,d.218.1.2	112675,112676,112677
3hx0A	335	37.43		
1oc7A	364	37.68	c.6.1.1	86794
2bvwA	362	38.02	c.6.1.1	30666
3cjnA	162	39.06		
2ethA	154	40.52	a.4.5.28	132358
2dqbA	376	41.02		
2hi0A	240	42.09		
3cz1A	119	42.45		
2bogX	286	42.90		
2fbhA	146	43.05	a.4.5.28	133245
2gnoA	305	45.04	a.80.1.1,c.37.1.20	135414,135415
2wghA	676	46.02		
1zb9A	143	47.86		
2nyxA	168	48.79		
1t7rA	269	55.30	a.123.1.1	106635
1jgsA	138	55.78	a.4.5.28	66683
1xx7A	184	62.91	a.211.1.1	116143
3e6mA	161	62.99		
1sr7A	259	63.37	a.123.1.1	105957
1yoyA	175	68.52	a.211.1.1	123795
3dnfA	297	68.72		
1l3kA	196	71.63	d.58.7.1,d.58.7.1	73539,73540
3i7aA	281	73.89		
3f10A	292	74.47		
3f0zA	292	75.76		
2ax6A	256	76.36	a.123.1.1	127479
2x58A	727	82.92		
3kwcA	229	84.34		
1u8vA	490	85.84	a.29.3.1,e.6.1.1	113196,113197
2parA	201	89.56