# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1vj7A	393	4.24e-21	a.211.1.1,d.218.1.8	100801,100802
2ogiA	196	0.3347		
2qgsA	225	0.5039	a.211.1.1	150782
3b57A	209	0.6519	a.211.1.1	154835
2o08A	188	1.967		
2pq7A	220	2.875	a.211.1.1	149786
2gz4A	207	3.010	a.211.1.1	147196
1vqrA	297	5.312	a.211.1.3	114015
1ynbA	173	6.366	a.211.1.1	123718
3m1tA	275	8.350		
1bouB	302	11.09	c.56.6.1	33859
2ax8A	256	11.22		
1xx7A	184	11.62	a.211.1.1	116143
3kh1A	200	11.95		
1xjjA	644	17.57		
3bddA	142	18.65		
2wghA	676	20.10		
3cjnA	162	21.02		
1lj9A	144	21.13	a.4.5.28	78035
3g3zA	145	21.17		
1lnwA	147	22.67	a.4.5.28	78104
1t7rA	269	24.03	a.123.1.1	106635
1xg7A	250	24.07	a.96.1.6	115281
1sr7A	259	24.78	a.123.1.1	105957
2dqbA	376	25.15		
2k9mA	130	26.11		
2ax6A	256	27.39	a.123.1.1	127479
1z91A	147	27.55	a.4.5.28	124736
1jjvA	206	29.19	c.37.1.1	71698
3kp7A	151	30.39		
2pw6A	271	30.57	c.56.6.1	149895
2pexA	153	32.24		
3ccgA	190	32.41		
2a61A	145	32.87	a.4.5.28	126187
2ethA	154	34.29	a.4.5.28	132358
3bpvA	138	35.40		
3dnfA	297	36.87		
2vunA	386	38.32		
2bodX	286	39.75	c.6.1.1	128909
3memA	457	39.94		
1larA	575	39.95	c.45.1.2,c.45.1.2	32693,32694
3i7aA	281	40.85		
3cdhA	155	43.12		
3kd6A	313	43.88		
1snlA	103	44.83	a.39.1.7	105820
3jw4A	148	45.94		
2vglB	591	46.41	i.23.1.1	153035
2frhA	127	46.43	a.4.5.28	133988
1ihp	438	47.71		
2h09A	155	48.15		
2vsgA	358	50.08	h.4.1.1	45780
3f0zA	292	51.02		
1a28A	256	51.44	a.123.1.1	19290
2parA	201	52.48		
3f10A	292	54.36		
1u8vA	490	54.96	a.29.3.1,e.6.1.1	113196,113197
3hbcA	320	58.98		
2x0lB	133	60.60		
1jgsA	138	60.98	a.4.5.28	66683
2x5bA	761	61.61		
2bvwA	362	63.34	c.6.1.1	30666
2fbiA	142	64.63	a.4.5.28	133246
3cz1A	119	65.59		
2yvlA	248	65.92		
2gnoA	305	66.83	a.80.1.1,c.37.1.20	135414,135415
1p9qC	256	67.92	a.5.8.1,d.235.1.2,d.58.11.3	104093,104094,104095
2aaxA	275	68.87		
1grx	85	69.40		
3c8tA	451	69.99		
3hx0A	335	70.77		
1zb9A	143	71.70		
1tv9A	335	72.79	a.60.6.1,a.60.12.1,d.218.1.2	112675,112676,112677
2c2hA	192	73.98	c.37.1.8	129668
1k0rA	366	75.52	b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1	67961,67962,67963,67964
2bogX	286	76.97		
3e6mA	161	78.63		
3bczA	293	80.42		
2qwwA	154	81.63		
3ljxA	288	81.72		
3gtdA	482	83.17		
1oc7A	364	84.18	c.6.1.1	86794
3msuA	427	85.53		
1l3kA	196	86.70	d.58.7.1,d.58.7.1	73539,73540
1eg5A	384	87.41	c.67.1.3	34429