# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1vj7A	393	2.25e-24	a.211.1.1,d.218.1.8	100801,100802
2ogiA	196	0.04766		
2qgsA	225	0.08186	a.211.1.1	150782
2o08A	188	0.09586		
3m1tA	275	0.3520		
3b57A	209	0.4136	a.211.1.1	154835
1xx7A	184	1.155	a.211.1.1	116143
2gz4A	207	1.522	a.211.1.1	147196
1ynbA	173	2.417	a.211.1.1	123718
1vqrA	297	4.147	a.211.1.3	114015
2ax8A	256	4.227		
1t7rA	269	4.257	a.123.1.1	106635
2pq7A	220	5.678	a.211.1.1	149786
2ax6A	256	5.973	a.123.1.1	127479
3hc1A	305	6.440		
3memA	457	8.099		
1sr7A	259	8.678	a.123.1.1	105957
3kh1A	200	9.436		
2aaxA	275	10.87		
2yvlA	248	11.64		
1ea5A	537	13.41	c.69.1.1	34592
2gnoA	305	16.55	a.80.1.1,c.37.1.20	135414,135415
1bouB	302	18.19	c.56.6.1	33859
2bvwA	362	19.76	c.6.1.1	30666
1oc7A	364	20.93	c.6.1.1	86794
1y44A	320	22.59	d.157.1.7	122608
1a28A	256	25.08	a.123.1.1	19290
1sqnA	261	25.44	a.123.1.1	105944
3ccgA	190	27.29		
3i7aA	281	28.96		
2hglA	136	29.11		
3gpkA	112	30.46		
3mzoA	216	32.05		
2phlA	397	35.31	b.82.1.2,b.82.1.2	28082,28083
3mjdA	232	38.80		
2pfkA	320	41.00	c.89.1.1	35577
2dqbA	376	43.32		
1k07A	263	43.62	d.157.1.1	77218
2parA	201	46.60		
2bodX	286	46.90	c.6.1.1	128909
1chmA	401	48.65	c.55.2.1,d.127.1.1	33545,41142
3gtiA	337	54.35		
2odpA	509	56.87		
2go9A	161	56.97		
3d00A	191	58.66		
2kh9A	92	58.83		
2a61A	145	60.21	a.4.5.28	126187
3bddA	142	62.14		
2qwwA	154	62.99		
1c52A	131	63.90	a.3.1.1	15810
1ovlA	271	63.98	a.123.1.1	87455
1tv9A	335	65.38	a.60.6.1,a.60.12.1,d.218.1.2	112675,112676,112677
1oroA	213	66.05	c.61.1.1	34093
1yoyA	175	66.06	a.211.1.1	123795
1dgwA	178	70.71	b.82.1.2	28090
1p9qC	256	70.84	a.5.8.1,d.235.1.2,d.58.11.3	104093,104094,104095
3bvpA	138	73.16		
2gviA	204	73.91	d.81.3.1,g.39.1.18	147187,147188
1i74A	309	74.07	c.107.1.1	61867
1bpyA	335	74.96	a.60.6.1,a.60.12.1,d.218.1.2	17980,75819,75820
2au3A	407	76.86		
1rg9A	383	78.34	d.130.1.1,d.130.1.1,d.130.1.1	97427,97428,97429
2bogX	286	78.54		
2zsiA	351	79.77		
3ljxA	288	80.27		
1bgcA	174	84.33	a.26.1.1	16822
1vrbA	342	86.22	b.82.2.11	120450
1xc1A	309	88.33	c.94.1.1	109543
1l3kA	196	89.53	d.58.7.1,d.58.7.1	73539,73540