# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vj7A 393 2.09e-10 a.211.1.1,d.218.1.8 100801,100802 3b57A 209 1.423 a.211.1.1 154835 2pq7A 220 2.524 a.211.1.1 149786 2qgsA 225 2.587 a.211.1.1 150782 3lc0A 456 2.983 3hrjA 439 3.512 2gz4A 207 5.830 a.211.1.1 147196 2ovyA 362 6.089 1f74A 293 7.201 c.1.10.1 29079 3b8iA 287 7.707 1fiuA 286 8.207 c.52.1.10 33317 2vhxA 377 8.610 3lxgA 308 9.821 3lerA 301 13.09 1nal1 297 16.28 3co8A 380 20.15 1qlpA 394 21.38 e.1.1.1 42628 2r8qA 359 21.54 2ousA 331 22.38 2h0qA 261 22.64 1zcaA 359 23.16 a.66.1.1,c.37.1.8 124897,124898 3m5vA 301 25.82 1o5kA 306 26.74 c.1.10.1 92504 1tbbA 332 26.90 a.211.1.2 106741 3k0lA 162 27.57 2vc6A 292 28.36 3kw3A 376 28.42 1fx7A 230 29.41 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1pjcA 361 30.66 c.2.1.4,c.23.12.2 30101,31361 1jgsA 138 31.27 a.4.5.28 66683 1tbfA 347 32.26 a.211.1.2 106743 2hd1A 326 32.34 a.211.1.2 136338 3ccgA 190 33.62 1h2eA 207 35.29 c.60.1.1 70857 3ecmA 338 36.25 1uozA 315 36.62 c.6.1.1 113354 2a6nA 292 36.87 c.1.10.1 126289 3kq5A 393 38.61 1wu7A 434 39.07 c.51.1.1,d.104.1.1 121275,121276 1n0wA 243 39.13 c.37.1.11 79772 3fluA 297 39.72 2ogiA 196 39.80 2a6lA 292 40.84 c.1.10.1 126285 3i8vA 354 43.24 3gwqA 426 43.70 2atsA 292 44.64 c.1.10.1 127306 3dynA 329 45.79 a.211.1.2 157942 2ikqA 270 46.06 3fa4A 302 46.41 2yxlA 450 47.00 2fbiA 142 47.11 a.4.5.28 133246 1dhpA 292 48.06 c.1.10.1 29097 3hurA 395 48.41 2ejaA 338 48.92 2qugA 394 48.97 1i74A 309 49.03 c.107.1.1 61867 1guxB 152 49.65 a.74.1.3 18389 1li4A 432 50.44 c.2.1.4,c.23.12.3 84616,84617 3maxA 367 51.74 1uwsA 489 52.53 c.1.8.4 108073 1cr1A 296 53.18 c.37.1.11 32286 2weyA 343 54.15 1yxaA 398 57.57 2p65A 187 59.18 1xkyA 301 59.73 c.1.10.1 122094 3c3yA 237 60.25 1u1jA 765 60.41 c.1.22.2,c.1.22.2 107590,107591 3h2sA 224 61.94 1k20A 310 62.93 c.107.1.1 68027 3ed1A 365 63.06 3dlwA 411 63.35 3cx8A 338 64.51 2rdxA 379 64.58 1on2A 142 65.01 a.4.5.24,a.76.1.1 87103,87104 3ggdA 245 66.05 3bz6A 183 66.55 a.4.5.75,a.4.5.75 155739,155740 3h5dA 311 66.57 1nsf 273 66.78 2ehhA 294 67.12 1y2kA 349 68.18 a.211.1.2 122571 2dorA 311 68.53 c.1.4.1 28593 3m1tA 275 68.82 3l9uA 201 71.46 2dy3A 361 72.22 7aatA 401 74.26 c.67.1.1 34250 2rfgA 297 74.37 1xrsA 516 74.67 c.1.19.4 115883 2nnnA 140 74.76 2pefA 373 75.66 2ibnA 250 75.84 a.211.1.4 137195 1k2wA 256 76.53 c.2.1.2 90927 1g8yA 279 77.14 c.37.1.11 32302 1k47A 337 77.18 d.14.1.5,d.58.26.4 72040,72041 3d4iA 273 77.57 1cuk 203 77.60 3et4A 255 78.09 2ojpA 292 79.31 2p8tA 200 79.33 a.4.5.72,d.74.4.2 149315,149316 1br1B 150 79.96 a.39.1.5 17309 3l84A 632 80.02 3ih1A 305 81.41 2rivA 343 81.56 2c6cA 707 81.75 a.48.2.1,c.8.4.1,c.56.5.5 129989,129990,129991 2eezA 369 81.86 1rkpA 326 82.88 a.211.1.2 97620 2a5hA 416 84.82 2vojA 371 85.22 1jubA 311 85.43 c.1.4.1 90908 1n3yA 198 86.45 c.62.1.1 79976 3g8rA 350 86.75 2i1oA 398 88.50 2hr3A 147 89.99 a.4.5.28 136678