# List of top-scoring protein chains for T0611.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3dcfA 218 3.46e-30 1vi0A 206 1.30e-26 a.4.1.9,a.121.1.1 100720,100721 2ibdA 204 2.46e-25 3himA 211 4.02e-24 3bcgA 215 7.90e-24 3locA 212 2.83e-23 3lhqA 220 2.45e-22 2iaiA 230 8.29e-22 3ccyA 203 1.68e-21 3cdlA 203 2.11e-21 3f1bA 203 2.43e-21 2uxuA 210 3.57e-21 2xdnA 210 4.29e-21 2genA 197 1.40e-20 a.4.1.9,a.121.1.1 135062,135063 2hytA 197 2.05e-20 3c07A 273 9.43e-20 a.4.1.9,a.121.1.1 155807,155808 3dewA 206 9.87e-20 2w53A 219 1.57e-19 3bqzA 194 1.46e-18 3br5A 194 1.50e-18 3br3A 194 1.59e-18 3br2A 194 1.79e-18 1qvtA 194 1.86e-18 a.4.1.9,a.121.1.1 104602,104603 3br0A 194 1.95e-18 1rkwA 194 1.96e-18 a.4.1.9,a.121.1.1 104967,104968 3lwjA 202 2.46e-18 1jt6A 188 3.10e-18 a.4.1.9,a.121.1.1 67247,67248 3btiA 188 3.26e-18 a.4.1.9,a.121.1.1 155566,155567 3he0A 196 3.42e-18 3bt9A 188 3.68e-18 a.4.1.9,a.121.1.1 155550,155551 2id6A 202 4.39e-18 a.4.1.9,a.121.1.1 147624,147625 2iekA 200 4.41e-18 a.4.1.9,a.121.1.1 147647,147648 1zkgA 212 4.88e-18 a.4.1.9,a.121.1.1 125194,125195 2f07A 197 1.64e-17 3f0cA 216 1.97e-17 2eh3A 179 2.10e-17 2wv1A 202 2.24e-17 2jk3A 188 5.31e-17 2fx0A 201 5.38e-17 a.4.1.9,a.121.1.1 134269,134270 3bhqA 211 5.64e-17 2jj7A 186 5.80e-17 1rktA 205 7.41e-17 a.4.1.9,a.121.1.1 97623,97624 2nx4A 194 8.72e-17 2d6yA 202 1.97e-16 a.4.1.9,a.121.1.1 131313,131314 3bruA 222 3.38e-16 3knwA 212 3.99e-16 1ui5A 215 4.88e-16 a.4.1.9,a.121.1.1 107856,107857 2g7sA 194 1.87e-15 a.4.1.9,a.121.1.1 134737,134738 3geuA 189 2.12e-15 3crjA 199 3.12e-15 3kz9A 206 3.42e-15 2g3bA 208 3.53e-15 a.4.1.9,a.121.1.1 134558,134559 2pbxA 203 4.22e-15 2qibA 231 4.30e-15 2raeA 207 4.73e-15 2zcmA 192 7.42e-15 2zcnA 192 7.61e-15 3e7qA 215 8.25e-15 2q24A 194 1.20e-14 2gfnA 209 1.35e-14 a.4.1.9,a.121.1.1 135101,135102 3dpjA 194 1.66e-14 2rasA 212 4.35e-14 2of7A 260 4.45e-14 3mvpA 217 4.46e-14 2qwtA 196 6.06e-14 2pz9A 226 6.73e-14 3gziA 218 6.92e-14 2fbqA 235 8.45e-14 a.4.1.9,a.121.1.1 133256,133257 3b81A 203 1.01e-13 3colA 196 1.73e-13 3eupA 204 2.04e-13 2qcoA 210 5.40e-13 3g1oA 255 8.28e-13 3g1lA 256 8.79e-13 3egqA 170 9.66e-13 1t56A 216 1.11e-12 a.4.1.9,a.121.1.1 106428,106429 1u9nA 236 1.13e-12 a.4.1.9,a.121.1.1 113246,113247 3g1mA 236 1.13e-12 3g7rA 221 1.48e-12 2hyjA 200 2.12e-12 a.4.1.9,a.121.1.1 147456,147457 2qtqA 213 2.61e-12 2i10A 202 4.50e-12 a.4.1.9,a.121.1.1 136960,136961 2np3A 212 4.53e-12 a.4.1.9,a.121.1.1 138420,138421 2fq4A 192 5.64e-12 a.4.1.9,a.121.1.1 133937,133938 2dg8A 193 6.35e-12 3bjbA 207 6.49e-12 2oerA 214 8.80e-12 1sgmA 191 1.00e-11 a.4.1.9,a.121.1.1 105537,105538 2rekA 199 1.81e-11 2np5A 203 2.40e-11 a.4.1.9,a.121.1.1 138424,138425 3c2bA 221 3.66e-11 2guhA 214 6.54e-11 3cjdA 198 9.06e-11 2vkeA 207 1.52e-10 a.4.1.9,a.121.1.1 153221,153222 2tctA 207 1.59e-10 a.4.1.9,a.121.1.1 16063,19240 2trtA 217 1.61e-10 a.4.1.9,a.121.1.1 16064,19241 3bqyA 209 1.86e-10 1qpiA 203 1.96e-10 2tct a.4.1.9,a.121.1.1 16072,19249 2fd5A 180 2.68e-10 a.4.1.9,a.121.1.1 133291,133292 2oi8A 216 3.56e-10 a.4.1.9,a.121.1.1 148778,148779 2dg7A 195 4.04e-10 3bniA 229 5.93e-10 3iuvA 201 6.17e-10 2ns7A 208 6.22e-10 3cwrA 208 6.90e-10 3fk7A 208 1.03e-09 1a6iA 217 1.22e-09 a.4.1.9,a.121.1.1 16066,19243 2zb9A 214 1.46e-09 2v57A 190 2.77e-09 2vprA 207 2.86e-09 1t33A 224 3.05e-09 a.4.1.9,a.121.1.1 106295,106296 3fiwA 211 3.75e-09 2zozA 183 3.84e-09 a.4.1.9,a.121.1.1 154740,154741 2zoyA 185 3.99e-09 2yveA 185 4.03e-09 2yvhA 177 4.22e-09 2zcxA 231 4.23e-09 2vkvA 208 4.47e-09 a.4.1.9,a.121.1.1 153230,153231 2qkoA 215 5.79e-09 2hkuA 215 6.91e-09 a.4.1.9,a.121.1.1 147302,147303 1zk8A 183 1.10e-08 a.4.1.9,a.121.1.1 125177,125178 2id3A 225 1.18e-08 a.4.1.9,a.121.1.1 137261,137262 2hxoA 237 1.41e-08 3jsjA 190 2.28e-08 2hxiA 241 2.98e-08 1z0xA 220 4.64e-08 a.4.1.9,a.121.1.1 124334,124335 3kkcA 177 1.49e-07 3frqA 195 2.12e-07 2optA 234 3.89e-07 2g7lA 243 8.03e-07 a.4.1.9,a.121.1.1 134734,134735 2o7tA 199 1.34e-06 a.4.1.9,a.121.1.1 148670,148671 3kkdA 237 4.24e-06 2iu5A 195 7.12e-06 a.4.1.9,a.121.1.1 147801,147802 3ljlA 156 8.46e-06 2g7gA 213 1.64e-03 a.4.1.9,a.121.1.1 134732,134733 2o5hA 136 1.32e-01 d.363.1.1 148599 3gf3A 588 1.14e+00 2i2xB 258 2.56e+00 2e85A 159 2.89e+00 2i8lA 156 2.90e+00 1bqyA 234 4.42e+00 5ptp b.47.1.2 26332 1ujzA 87 4.55e+00 a.28.2.1 99475 3hyhA 275 4.61e+00 2fh9A 274 4.63e+00 3daeA 283 4.73e+00 2gziA 86 4.80e+00 3e3mA 355 4.97e+00 3edhA 201 5.28e+00 3edgA 202 5.30e+00 2erhA 87 5.87e+00 2gykA 86 6.27e+00 a.28.2.1 145276 2qy6A 257 6.30e+00 2gzfA 86 6.36e+00 1kftA 78 6.87e+00 a.60.2.3 77375 2vloA 93 7.59e+00 a.28.2.1 153296 1ceiA 94 7.69e+00 a.28.2.1 16939 2gzeA 86 7.69e+00 1znvA 93 7.95e+00 a.28.2.1 125410 1unkA 87 8.49e+00 1cei a.28.2.1 16935 3ktmA 191 8.54e+00 2vlqA 86 8.67e+00 a.28.2.1 153298 3l8nA 202 9.45e+00 2z6eA 419 9.66e+00 2j1dG 483 9.80e+00 2gzgA 86 9.84e+00 1op2A 234 1.02e+01 b.47.1.2 104020 1bxiA 86 1.02e+01 1cei a.28.2.1 16945 1op0A 234 1.02e+01 b.47.1.2 104019 1fr2A 86 1.11e+01 a.28.2.1 83256 3gjnA 86 1.16e+01 2awcA 130 1.30e+01 2zm2A 392 1.36e+01 1lwjA 441 1.36e+01 b.71.1.1,c.1.8.1 74303,74304 2zm9A 392 1.45e+01 3h7nA 729 1.45e+01 3f7fA 729 1.47e+01 3hxrA 761 1.48e+01 3gklC 86 1.52e+01 1iomA 377 1.53e+01 a.103.1.1 83698 2g8sA 353 1.60e+01 2avkA 136 1.68e+01 1gwcA 230 1.70e+01 a.45.1.1,c.47.1.5 70660,70661 2z1aA 552 1.70e+01 d.114.1.1,d.159.1.2 153927,153928 1l0wA 580 1.75e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 3i76A 244 1.87e+01 2j9wA 102 1.95e+01 3ed5A 238 2.02e+01 2guwA 484 2.10e+01 1bwpA 233 2.15e+01 c.23.10.3 31342 1ud9A 245 2.47e+01 d.131.1.2,d.131.1.2 107768,107769 2zm0A 392 2.52e+01 2zlyA 392 2.56e+01 3ejnA 474 2.59e+01 a.118.8.6 158180 1tz9A 367 2.65e+01 c.1.15.6 107466 2zmaA 392 2.66e+01 2zm8A 392 2.71e+01 2e8iA 392 2.78e+01 1wycA 392 2.79e+01 e.3.1.1 145838 2wjeA 247 2.81e+01 1wybA 392 2.84e+01 e.3.1.1 145837 1bwrA 233 2.84e+01 c.23.10.3 31344 3dt9A 232 2.88e+01 2zm7A 392 2.94e+01 2dcfA 392 2.95e+01 e.3.1.1 146485 3a2xA 249 2.99e+01 1vajA 214 3.00e+01 d.309.1.1 119907 2uvjA 408 3.17e+01 3b40A 417 3.19e+01 1wabA 232 3.19e+01 c.23.10.3 31341 1wp9A 494 3.19e+01 c.37.1.19,c.37.1.19 121143,121144 2qecA 204 3.21e+01 1es9A 232 3.29e+01 1wab c.23.10.3 31340 2r9pA 224 3.34e+01 2uvgA 408 3.34e+01 3dt8A 232 3.44e+01 2j13A 247 3.57e+01 c.6.2.3 137934 3a5wA 249 3.57e+01 2cv4A 250 3.63e+01 c.47.1.10 130837 1h4wA 224 3.74e+01 b.47.1.2 65622 3f52A 117 3.82e+01 3ediA 201 3.89e+01 3ctpA 330 4.02e+01 1ogiA 303 4.09e+01 b.43.4.2,c.25.1.1 92914,92915 2pg4A 95 4.11e+01 a.4.5.48 149455 2qv2A 342 4.34e+01 1yl3E 338 4.36e+01 2yyjA 481 4.36e+01 1mgtA 174 4.44e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 1qruA 553 4.48e+01 1gtrA b.53.1.2,c.26.1.1 26946,31585 2zdbA 195 4.53e+01 2yykA 481 4.53e+01 2e0zA 345 4.56e+01 1qrsA 553 4.57e+01 1gtrA b.53.1.2,c.26.1.1 26941,31580 2rd2A 556 4.57e+01 b.53.1.2,c.26.1.1 151918,151919 1nylA 539 4.61e+01 b.53.1.2,c.26.1.1 80741,80742 3a2vA 249 4.66e+01 1h42A 304 4.66e+01 b.43.4.2,c.25.1.1 90606,90607 1qtqA 553 4.73e+01 1gtrA b.53.1.2,c.26.1.1 26940,31579 1euyA 548 4.73e+01 1gtrA b.53.1.2,c.26.1.1 26945,31584 1o0cA 554 4.74e+01 b.53.1.2,c.26.1.1 86529,86530 2nvlA 250 4.75e+01 c.47.1.10 148468 1b85A 351 4.77e+01 1arv a.93.1.1 18581 1qrtA 553 4.78e+01 1gtrA b.53.1.2,c.26.1.1 26943,31582 1yyzA 337 4.82e+01 2f3bA 338 4.83e+01 e.7.1.1 132861 1nuyA 337 4.84e+01 e.7.1.1 86213 1fj9A 337 4.86e+01 1frpA e.7.1.1 42907 5fbpA 335 4.89e+01 1frpA e.7.1.1 42873 2g4rA 160 4.89e+01 1frpA 335 4.90e+01 1frpA e.7.1.1 42875 1levA 337 4.90e+01 e.7.1.1 77911 1bwqA 233 4.96e+01 c.23.10.3 31343 1fsaA 337 5.01e+01 1frpA e.7.1.1 42903 1kz8A 337 5.03e+01 e.7.1.1 77633 1s7oA 113 5.37e+01 a.4.13.3 105354 2qbuA 232 5.52e+01 2r78A 117 5.72e+01 3dbiA 338 5.87e+01 3k40A 475 5.92e+01 1b80A 351 6.12e+01 1arv a.93.1.1 18579 2r0tA 390 6.22e+01 2qfoA 207 6.22e+01 d.122.1.1 150740 2jjzB 150 6.30e+01 3b8xA 390 6.36e+01 2vyqA 304 6.44e+01 1uuqA 440 6.45e+01 c.1.8.3 100015 2jjzA 150 6.46e+01 2p20A 652 6.59e+01 1y1uA 585 6.65e+01 1osfA 215 6.66e+01 d.122.1.1 87380 1bqeA 295 6.70e+01 b.43.4.2,c.25.1.1 64760,64761 1ulyA 192 6.76e+01 a.4.5.58 113297 2jjcA 218 6.81e+01 d.122.1.1 148133 1ujpA 271 6.85e+01 c.1.2.4 99462 1rdzA 337 7.07e+01 1frpA e.7.1.1 42882 3iwtA 178 7.11e+01 3a9bA 395 7.12e+01 3eodA 130 7.14e+01 3cmlA 362 7.20e+01 3hhuA 224 7.20e+01 3bqkA 360 7.20e+01 2ev1A 222 7.21e+01 1zbrA 349 7.25e+01 d.126.1.6 124868 2g0tA 350 7.37e+01 c.37.1.10 134499 1llpA 343 7.41e+01 a.93.1.1 18578 3eo8A 219 7.43e+01 1pruA 56 7.45e+01 a.35.1.5 17104 1uymA 220 7.69e+01 d.122.1.1 108148 2p2bA 652 7.72e+01 2p2mA 652 7.75e+01 2zwaA 695 7.78e+01 2p2jA 652 7.81e+01 3druA 404 7.85e+01 1azrA 128 7.87e+01 1nwpA b.6.1.1 22983 3gr9A 390 7.88e+01