# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3dcfA 218 6.25e-19 1vi0A 206 3.06e-17 a.4.1.9,a.121.1.1 100720,100721 3himA 211 1.41e-16 3bcgA 215 3.72e-16 2ibdA 204 4.08e-16 3lhqA 220 2.05e-15 1pb6A 212 2.54e-15 a.4.1.9,a.121.1.1 88017,88018 3locA 212 2.88e-15 3f1bA 203 5.08e-15 2uxuA 210 1.18e-14 2xdnA 210 1.27e-14 3cdlA 203 5.29e-14 2iaiA 230 5.70e-14 2hytA 197 5.85e-14 3ccyA 203 8.96e-14 2genA 197 2.44e-13 a.4.1.9,a.121.1.1 135062,135063 3lwjA 202 3.02e-13 2w53A 219 3.96e-13 3he0A 196 6.31e-13 2fx0A 201 9.38e-13 a.4.1.9,a.121.1.1 134269,134270 3dewA 206 1.06e-12 2f07A 197 1.44e-12 3bqzA 194 2.41e-12 2jj7A 186 2.63e-12 3br3A 194 2.88e-12 2id6A 202 2.92e-12 a.4.1.9,a.121.1.1 147624,147625 1z77A 200 3.30e-12 a.4.1.9,a.121.1.1 124588,124589 3br5A 194 3.70e-12 3btiA 188 3.84e-12 a.4.1.9,a.121.1.1 155566,155567 3br2A 194 3.96e-12 1zkgA 212 5.15e-12 a.4.1.9,a.121.1.1 125194,125195 3bhqA 211 6.53e-12 1qvtA 194 7.09e-12 a.4.1.9,a.121.1.1 104602,104603 1jt6A 188 8.25e-12 a.4.1.9,a.121.1.1 67247,67248 2iekA 200 1.01e-11 a.4.1.9,a.121.1.1 147647,147648 3bruA 222 1.52e-11 2g3bA 208 2.73e-11 a.4.1.9,a.121.1.1 134558,134559 1rktA 205 2.81e-11 a.4.1.9,a.121.1.1 97623,97624 2eh3A 179 3.78e-11 2pbxA 203 3.92e-11 3kz9A 206 5.87e-11 1ui5A 215 6.11e-11 a.4.1.9,a.121.1.1 107856,107857 2qibA 231 6.28e-11 3knwA 212 6.86e-11 2nx4A 194 7.04e-11 3e7qA 215 1.32e-10 3crjA 199 1.42e-10 2g7sA 194 2.09e-10 a.4.1.9,a.121.1.1 134737,134738 2d6yA 202 2.67e-10 a.4.1.9,a.121.1.1 131313,131314 2raeA 207 3.96e-10 2gfnA 209 4.06e-10 a.4.1.9,a.121.1.1 135101,135102 2q24A 194 5.94e-10 1t56A 216 6.07e-10 a.4.1.9,a.121.1.1 106428,106429 3g1lA 256 6.37e-10 2qwtA 196 8.14e-10 3g1oA 255 9.15e-10 3eupA 204 9.90e-10 2hyjA 200 1.03e-09 a.4.1.9,a.121.1.1 147456,147457 3g1mA 236 1.11e-09 3dpjA 194 1.24e-09 2of7A 260 1.32e-09 3gziA 218 1.83e-09 2zcmA 192 1.91e-09 3mvpA 217 2.18e-09 2rasA 212 2.61e-09 3b81A 203 2.62e-09 3colA 196 2.74e-09 2fbqA 235 4.05e-09 a.4.1.9,a.121.1.1 133256,133257 2fq4A 192 4.10e-09 a.4.1.9,a.121.1.1 133937,133938 3g7rA 221 7.05e-09 2dg8A 193 1.16e-08 2qtqA 213 1.92e-08 3bjbA 207 3.10e-08 2np5A 203 3.56e-08 a.4.1.9,a.121.1.1 138424,138425 2oi8A 216 4.57e-08 a.4.1.9,a.121.1.1 148778,148779 2qcoA 210 6.07e-08 2rekA 199 7.75e-08 2i10A 202 8.33e-08 a.4.1.9,a.121.1.1 136960,136961 3c2bA 221 9.28e-08 2vkeA 208 1.04e-07 a.4.1.9,a.121.1.1 153221,153222 2tct 207 1.07e-07 2tct 3bqyA 209 1.21e-07 2o7oA 207 1.70e-07 a.4.1.9,a.121.1.1 138930,138931 3cjdA 198 2.06e-07 2oerA 214 2.20e-07 1sgmA 191 2.39e-07 a.4.1.9,a.121.1.1 105537,105538 2fd5A 180 2.77e-07 a.4.1.9,a.121.1.1 133291,133292 2guhA 214 3.30e-07 2dg7A 195 3.40e-07 2yveA 185 3.64e-07 3cwrA 208 4.12e-07 1a6i 217 4.51e-07 2tct 2vprA 207 6.80e-07 1t33A 224 7.47e-07 a.4.1.9,a.121.1.1 106295,106296 2zb9A 214 7.80e-07 2zcxA 231 7.88e-07 3bniA 229 9.57e-07 2id3A 225 1.20e-06 a.4.1.9,a.121.1.1 137261,137262 2hkuA 215 1.90e-06 a.4.1.9,a.121.1.1 147302,147303 3fiwA 211 2.02e-06 1z0xA 220 3.15e-06 a.4.1.9,a.121.1.1 124334,124335 2v57A 190 3.36e-06 2vkvA 208 4.17e-06 a.4.1.9,a.121.1.1 153230,153231 3jsjA 190 5.51e-06 1zk8A 183 7.26e-06 a.4.1.9,a.121.1.1 125177,125178 2o7tA 199 8.19e-06 a.4.1.9,a.121.1.1 148670,148671 3frqA 195 1.21e-05 2optA 234 1.78e-05 2qkoA 215 1.81e-05 2hxoA 237 1.82e-05 2g7lA 243 6.22e-05 a.4.1.9,a.121.1.1 134734,134735 3g56A 195 6.50e-05 3kkcA 177 7.55e-05 2iu5A 195 3.53e-04 a.4.1.9,a.121.1.1 147801,147802 3kkdA 237 6.53e-03 2g7gA 213 8.55e-03 a.4.1.9,a.121.1.1 134732,134733 1oyjA 231 5.42e-01 a.45.1.1,c.47.1.5 87597,87598 2bmwA 304 2.48e+00 b.43.4.2,c.25.1.1 128815,128816 1i5nA 146 2.90e+00 1i5nA a.24.10.3 61805 1ogiA 303 3.07e+00 b.43.4.2,c.25.1.1 92914,92915 3c1mA 473 4.80e+00 2q0zX 339 4.92e+00 a.289.1.1,b.1.18.22 149993,149994 1w34A 304 5.69e+00 b.43.4.2,c.25.1.1 120620,120621 1go2A 304 6.00e+00 b.43.4.2,c.25.1.1 76243,76244 2q7sA 290 7.42e+00 c.56.5.9 150103 2i2xB 258 8.47e+00 2ve3A 444 8.66e+00 3a1yG 284 8.75e+00 2bsaA 303 1.07e+01 b.43.4.2,c.25.1.1 129078,129079 3deuA 166 1.08e+01 a.4.5.28 157600 1q59A 172 1.13e+01 f.1.4.1 95881 3c0qA 301 1.14e+01 3lg6A 235 1.17e+01 1knvA 293 1.25e+01 c.52.1.7 68707 2gsoA 393 1.34e+01 1uwsA 489 1.39e+01 c.1.8.4 108073 3d4iA 273 1.41e+01 1ho8A 480 1.47e+01 1ho8A a.118.1.9 61107 2a11A 242 1.50e+01 1y1uA 585 1.50e+01 2xd7A 193 1.50e+01 2vvwA 162 1.52e+01 2ikqA 270 1.57e+01 3cbfA 397 1.59e+01 3lrdA 137 1.78e+01 3e9nA 245 1.83e+01 2kd1A 118 1.84e+01 2fr7A 412 1.91e+01 2j6vA 301 2.04e+01 2z1yA 397 2.08e+01 3c8eA 288 2.10e+01 2zyjA 397 2.16e+01 3blnA 143 2.20e+01 2vlqA 86 2.26e+01 a.28.2.1 153298 1fj2A 232 2.34e+01 1auoA c.69.1.14 34720 2fuqA 747 2.35e+01 3fpfA 298 2.35e+01 1a0p 290 2.40e+01 1a0p 1a0pA 290 2.40e+01 a.60.9.1,d.163.1.1 18105,42165 1emvA 86 2.46e+01 1cei a.28.2.1 16944 1yhuB 144 2.51e+01 3b96A 587 2.53e+01 1yuwA 554 2.65e+01 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 1pgtA 210 2.66e+01 1pgtA a.45.1.1,c.47.1.5 17515,32809 3gf3A 588 2.81e+01 2jjzA 150 2.85e+01 3f3fC 570 2.85e+01 2cz2A 223 2.87e+01 1fr2A 86 2.90e+01 a.28.2.1 83256 3eo8A 219 2.91e+01 17gsA 210 2.92e+01 1pgtA a.45.1.1,c.47.1.5 17524,32818 3kmnA 209 3.05e+01 2ev1A 222 3.06e+01 1qvbA 481 3.08e+01 1qvbA c.1.8.4 28983 1cei 94 3.08e+01 1cei 1w63A 618 3.10e+01 i.23.1.1 109192 3bptA 363 3.14e+01 1xjzA 233 3.18e+01 a.132.1.1 122049 3l55A 353 3.19e+01 1hzfA 367 3.22e+01 a.102.4.4 76731 2fncA 381 3.23e+01 1fw1A 216 3.25e+01 a.45.1.1,c.47.1.5 60051,60052 2a2rA 210 3.27e+01 a.45.1.1,c.47.1.5 126058,126059 3iv0A 481 3.37e+01 2gykA 86 3.38e+01 a.28.2.1 145276 1bupA 386 3.41e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 3lysA 112 3.42e+01 1gowA 489 3.44e+01 1qvbA c.1.8.4 28981 1n45A 233 3.44e+01 a.132.1.1 79981 3e7jA 749 3.44e+01 2douA 376 3.47e+01 3i9tA 263 3.51e+01 1j9yA 385 3.52e+01 1j9yA c.1.8.3 62791 2zyrA 484 3.58e+01 3ljkA 543 3.72e+01 2whmA 385 3.73e+01 1odzA 386 3.80e+01 c.1.8.3 86889 2zbxA 412 3.80e+01 1qw9A 502 3.81e+01 b.71.1.2,c.1.8.3 96466,96467 2jjzB 150 3.81e+01 3c18A 290 3.86e+01 2gsjA 271 3.86e+01 2c29D 337 3.92e+01 2g29A 417 3.92e+01 2h0qA 261 3.95e+01 1wmwA 330 3.98e+01 2bpa1 426 3.99e+01 2bpa1 1kay 381 4.11e+01 1ba1 3l8nA 202 4.14e+01 1wmaA 276 4.20e+01 c.2.1.2 121042 3hyhA 275 4.21e+01 1xg2B 153 4.24e+01 2zigA 297 4.34e+01 1r5qA 102 4.35e+01 a.186.1.1 97103 1foeA 377 4.38e+01 1foeA a.87.1.1,b.55.1.1 18517,26969 3evtA 324 4.46e+01 1wa5C 960 4.52e+01 a.118.1.1 114433 3lr2A 137 4.53e+01 3fzhA 381 4.55e+01 3m0fA 213 4.58e+01 3lr8A 137 4.61e+01 2fnoA 248 4.62e+01 a.45.1.1,c.47.1.5 133821,133822 3mgxA 415 4.71e+01 2oikA 154 4.84e+01 d.13.1.1 148780 1y60A 169 4.91e+01 d.14.1.12 116489 1bsmA 201 4.94e+01 1avmA a.2.11.1,d.44.1.1 15780,38743 2dcfA 392 4.96e+01 e.3.1.1 146485 1uuqA 440 4.97e+01 c.1.8.3 100015 1px5A 349 5.15e+01 a.160.1.2,d.218.1.6 95277,95278 2vvyA 169 5.18e+01 1ydnA 295 5.19e+01 1kfrA 147 5.22e+01 a.1.1.2 72424 1po5A 476 5.35e+01 a.104.1.1 94963 1k4mA 213 5.38e+01 c.26.1.3 77258 3b40A 417 5.39e+01 2gu2A 312 5.48e+01 c.56.5.7 147177 3lr6A 137 5.49e+01 2zyiA 475 5.61e+01 2kuaA 170 5.64e+01 1yx1A 264 5.67e+01 c.1.15.7 124169 2q4zA 312 5.72e+01 2uxwA 607 5.74e+01 2yv5A 302 5.76e+01 3f8tA 506 5.78e+01 1sig 339 5.79e+01 1sig 1sigA 339 5.79e+01 a.177.1.1 19068 1aisB 200 5.81e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1avmA 201 5.97e+01 1avmA a.2.11.1,d.44.1.1 15782,38745 3hz6A 511 5.98e+01 1auoA 218 6.03e+01 1auoA c.69.1.14 34716 3hm7A 448 6.05e+01 1unkA 87 6.07e+01 1cei a.28.2.1 16935 1u0mA 382 6.15e+01 c.95.1.2,c.95.1.2 107557,107558 3c3rA 380 6.20e+01 3a8yA 392 6.22e+01 1uzeA 589 6.25e+01 d.92.1.5 108174 1wybA 392 6.27e+01 e.3.1.1 145837 1vb5A 276 6.27e+01 c.124.1.5 113604 2iu1A 208 6.30e+01 1j93A 353 6.33e+01 c.1.22.1 66454 3dwcA 505 6.36e+01 3lxzA 229 6.38e+01 1ufaA 520 6.40e+01 a.8.3.3,c.6.2.4 99329,99330 1pbgA 468 6.51e+01 1e70M c.1.8.4 28946 1z8oA 404 6.53e+01 a.104.1.1 124722 2yx6A 121 6.53e+01 3fozA 316 6.65e+01 1vls 146 6.75e+01 1vls 1vlsA 146 6.75e+01 a.24.2.1 16532 1j8mF 297 6.77e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1syyA 346 6.77e+01 a.25.1.2 106126 3gfoA 275 6.92e+01 1wycA 392 6.94e+01 e.3.1.1 145838 1vg0A 650 6.98e+01 c.3.1.3,d.16.1.6 108596,108597 1mf7A 194 7.07e+01 c.62.1.1 84937 3c4bA 265 7.08e+01 1zp2A 235 7.18e+01 2jkvA 505 7.28e+01 2oewA 380 7.44e+01 1cfzA 162 7.45e+01 1cfzA c.56.1.1 33754 3a64A 395 7.50e+01 1nb8A 353 7.60e+01 d.3.1.9 80385 2e8iA 392 7.60e+01 2imsA 171 7.65e+01 1n5dA 288 7.66e+01 c.2.1.2 80030 2z5bA 151 7.79e+01 1kqfB 294 7.88e+01 d.58.1.5,f.23.22.1 75900,75901 3fswA 128 7.91e+01 2yrrA 353 7.96e+01