# TARGET T0602 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str2-from-empty.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0602.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 75 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 S 0.001 0.014 0.460 0.002 0.145 0.121 0.001 0.001 0.005 0.100 0.137 0.004 0.011 2 N 0.002 0.037 0.287 0.002 0.225 0.117 0.001 0.001 0.005 0.103 0.207 0.007 0.008 3 A 0.003 0.029 0.252 0.001 0.208 0.103 0.001 0.001 0.003 0.162 0.223 0.004 0.012 4 M 0.002 0.015 0.187 0.001 0.114 0.175 0.001 0.001 0.002 0.154 0.338 0.004 0.008 5 E 0.001 0.012 0.205 0.001 0.056 0.204 0.001 0.001 0.001 0.214 0.300 0.002 0.004 6 R 0.001 0.009 0.346 0.001 0.017 0.145 0.001 0.001 0.001 0.387 0.090 0.002 0.003 7 H 0.001 0.004 0.320 0.001 0.018 0.498 0.001 0.001 0.001 0.108 0.049 0.001 0.002 8 Q 0.001 0.001 0.019 0.001 0.017 0.926 0.001 0.001 0.001 0.010 0.027 0.001 0.001 9 H 0.001 0.001 0.014 0.001 0.016 0.936 0.001 0.001 0.001 0.008 0.024 0.001 0.001 10 L 0.001 0.001 0.012 0.001 0.012 0.956 0.001 0.001 0.001 0.005 0.013 0.001 0.001 11 L 0.001 0.001 0.004 0.001 0.003 0.988 0.001 0.001 0.001 0.002 0.003 0.001 0.001 12 S 0.001 0.001 0.002 0.001 0.002 0.991 0.001 0.001 0.001 0.001 0.004 0.001 0.001 13 E 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 14 Y 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 Q 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 Q 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.006 0.001 0.001 17 I 0.001 0.001 0.001 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.006 0.001 0.001 18 L 0.001 0.001 0.001 0.001 0.002 0.991 0.001 0.001 0.001 0.001 0.006 0.001 0.001 19 T 0.001 0.001 0.002 0.001 0.003 0.975 0.001 0.001 0.001 0.001 0.019 0.001 0.001 20 L 0.001 0.001 0.004 0.001 0.003 0.934 0.001 0.001 0.001 0.004 0.054 0.001 0.001 21 S 0.001 0.001 0.020 0.001 0.001 0.943 0.001 0.001 0.001 0.024 0.011 0.001 0.001 22 E 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.001 0.002 0.004 0.001 0.001 23 Q 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.002 0.001 0.001 24 M 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 25 L 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 26 V 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.002 0.001 0.001 27 L 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.004 0.001 0.001 28 A 0.001 0.001 0.003 0.001 0.002 0.973 0.001 0.001 0.001 0.002 0.019 0.001 0.001 29 T 0.001 0.001 0.006 0.001 0.008 0.880 0.001 0.001 0.001 0.003 0.102 0.001 0.001 30 E 0.001 0.001 0.008 0.001 0.003 0.621 0.001 0.001 0.001 0.018 0.350 0.001 0.001 31 G 0.001 0.001 0.146 0.001 0.002 0.375 0.001 0.001 0.001 0.113 0.363 0.001 0.001 32 N 0.001 0.009 0.291 0.001 0.003 0.516 0.001 0.001 0.001 0.124 0.056 0.001 0.001 33 W 0.001 0.001 0.012 0.001 0.003 0.967 0.001 0.001 0.001 0.012 0.004 0.001 0.001 34 D 0.001 0.001 0.004 0.001 0.005 0.986 0.001 0.001 0.001 0.002 0.002 0.001 0.001 35 A 0.001 0.001 0.001 0.001 0.002 0.993 0.001 0.001 0.001 0.001 0.002 0.001 0.001 36 L 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 37 V 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 38 D 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.006 0.001 0.001 39 L 0.001 0.001 0.002 0.001 0.001 0.986 0.001 0.001 0.001 0.001 0.010 0.001 0.001 40 E 0.001 0.001 0.002 0.001 0.001 0.992 0.001 0.001 0.001 0.002 0.003 0.001 0.001 41 M 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 42 T 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.005 0.001 0.001 43 Y 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.006 0.001 0.001 44 L 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 45 K 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 46 A 0.001 0.001 0.001 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.006 0.001 0.001 47 V 0.001 0.001 0.001 0.001 0.002 0.990 0.001 0.001 0.001 0.001 0.005 0.001 0.001 48 E 0.001 0.001 0.002 0.001 0.005 0.980 0.001 0.001 0.001 0.002 0.009 0.001 0.001 49 S 0.001 0.001 0.003 0.001 0.008 0.958 0.001 0.001 0.001 0.002 0.028 0.001 0.001 50 T 0.001 0.001 0.005 0.001 0.016 0.935 0.001 0.001 0.001 0.006 0.034 0.001 0.001 51 A 0.001 0.001 0.011 0.001 0.017 0.861 0.001 0.001 0.001 0.012 0.094 0.002 0.001 52 N 0.001 0.001 0.040 0.001 0.028 0.677 0.001 0.001 0.001 0.032 0.217 0.001 0.003 53 I 0.001 0.005 0.293 0.001 0.020 0.360 0.001 0.001 0.002 0.180 0.127 0.007 0.006 54 T 0.001 0.013 0.533 0.001 0.028 0.147 0.001 0.001 0.002 0.144 0.115 0.005 0.012 55 I 0.001 0.012 0.482 0.001 0.046 0.095 0.001 0.001 0.002 0.235 0.109 0.009 0.008 56 S 0.001 0.011 0.615 0.001 0.064 0.070 0.001 0.001 0.004 0.137 0.088 0.003 0.008 57 S 0.001 0.014 0.481 0.001 0.081 0.083 0.001 0.001 0.006 0.207 0.116 0.005 0.006 58 C 0.001 0.011 0.637 0.001 0.047 0.053 0.001 0.001 0.005 0.127 0.111 0.002 0.006 59 S 0.001 0.019 0.604 0.001 0.036 0.094 0.001 0.001 0.006 0.153 0.084 0.002 0.003 60 S 0.001 0.004 0.637 0.001 0.012 0.168 0.001 0.001 0.001 0.147 0.029 0.001 0.002 61 L 0.001 0.001 0.018 0.001 0.013 0.924 0.001 0.001 0.001 0.013 0.031 0.001 0.001 62 M 0.001 0.001 0.005 0.001 0.006 0.972 0.001 0.001 0.001 0.005 0.012 0.001 0.001 63 L 0.001 0.001 0.006 0.001 0.005 0.981 0.001 0.001 0.001 0.003 0.005 0.001 0.001 64 Q 0.001 0.001 0.005 0.001 0.003 0.987 0.001 0.001 0.001 0.001 0.003 0.001 0.001 65 D 0.001 0.001 0.002 0.001 0.003 0.987 0.001 0.001 0.001 0.002 0.007 0.001 0.001 66 L 0.001 0.001 0.003 0.001 0.002 0.978 0.001 0.001 0.001 0.001 0.015 0.001 0.001 67 L 0.001 0.001 0.005 0.001 0.001 0.978 0.001 0.001 0.001 0.002 0.013 0.001 0.001 68 R 0.001 0.001 0.005 0.001 0.001 0.982 0.001 0.001 0.001 0.003 0.007 0.001 0.001 69 E 0.001 0.001 0.002 0.001 0.001 0.987 0.001 0.001 0.001 0.002 0.008 0.001 0.001 70 K 0.001 0.001 0.004 0.001 0.001 0.985 0.001 0.001 0.001 0.002 0.008 0.001 0.001 71 L 0.001 0.001 0.003 0.001 0.001 0.990 0.001 0.001 0.001 0.002 0.003 0.001 0.001 72 R 0.001 0.001 0.002 0.001 0.002 0.990 0.001 0.001 0.001 0.001 0.004 0.001 0.001 73 A 0.001 0.001 0.001 0.001 0.002 0.978 0.001 0.001 0.001 0.002 0.017 0.001 0.001 74 I 0.001 0.001 0.003 0.001 0.001 0.966 0.001 0.001 0.001 0.002 0.028 0.001 0.001 75 L 0.001 0.001 0.010 0.001 0.003 0.947 0.001 0.001 0.001 0.011 0.028 0.001 0.001 76 D 0.001 0.001 0.023 0.001 0.004 0.893 0.001 0.001 0.001 0.018 0.061 0.001 0.001 77 N 0.001 0.001 0.028 0.001 0.003 0.880 0.001 0.001 0.001 0.043 0.046 0.001 0.001 78 E 0.001 0.001 0.011 0.001 0.004 0.968 0.001 0.001 0.001 0.006 0.009 0.001 0.001 79 I 0.001 0.001 0.001 0.001 0.005 0.987 0.001 0.001 0.001 0.001 0.005 0.001 0.001 80 E 0.001 0.001 0.001 0.001 0.006 0.984 0.001 0.001 0.001 0.001 0.007 0.001 0.001 81 I 0.001 0.001 0.001 0.001 0.004 0.987 0.001 0.001 0.001 0.002 0.006 0.001 0.001 82 K 0.001 0.001 0.001 0.001 0.003 0.991 0.001 0.001 0.001 0.001 0.004 0.001 0.001 83 R 0.001 0.001 0.001 0.001 0.004 0.980 0.001 0.001 0.001 0.001 0.013 0.001 0.001 84 L 0.001 0.001 0.003 0.001 0.003 0.945 0.001 0.001 0.001 0.002 0.046 0.001 0.001 85 L 0.001 0.001 0.008 0.001 0.001 0.949 0.001 0.001 0.001 0.016 0.024 0.001 0.001 86 Q 0.001 0.001 0.005 0.001 0.003 0.981 0.001 0.001 0.001 0.005 0.005 0.001 0.001 87 L 0.001 0.001 0.004 0.001 0.009 0.978 0.001 0.001 0.001 0.001 0.008 0.001 0.001 88 R 0.001 0.001 0.002 0.001 0.004 0.986 0.001 0.001 0.001 0.001 0.008 0.001 0.001 89 L 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.003 0.001 0.001 90 D 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.004 0.001 0.001 91 R 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 92 L 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 93 S 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 94 D 0.001 0.001 0.001 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.007 0.001 0.001 95 L 0.001 0.001 0.001 0.001 0.001 0.970 0.001 0.001 0.001 0.001 0.027 0.001 0.001 96 V 0.001 0.001 0.007 0.001 0.003 0.911 0.001 0.001 0.001 0.007 0.071 0.001 0.001 97 G 0.001 0.001 0.065 0.001 0.011 0.563 0.001 0.001 0.001 0.034 0.325 0.001 0.001 98 Q 0.001 0.003 0.119 0.001 0.026 0.431 0.001 0.001 0.001 0.139 0.280 0.001 0.001 99 S 0.001 0.005 0.254 0.001 0.024 0.427 0.001 0.001 0.001 0.177 0.107 0.002 0.003 100 T 0.001 0.006 0.199 0.001 0.042 0.556 0.001 0.001 0.001 0.090 0.097 0.002 0.007 101 K 0.001 0.003 0.084 0.001 0.021 0.776 0.001 0.001 0.001 0.057 0.046 0.004 0.007 102 Q 0.001 0.003 0.030 0.001 0.012 0.922 0.001 0.001 0.001 0.011 0.010 0.001 0.008 103 Q 0.002 0.002 0.025 0.001 0.006 0.937 0.001 0.001 0.004 0.007 0.007 0.004 0.004 104 A 0.003 0.002 0.014 0.001 0.005 0.939 0.001 0.001 0.003 0.005 0.016 0.003 0.009 105 V 0.007 0.002 0.014 0.001 0.009 0.922 0.001 0.002 0.002 0.009 0.020 0.003 0.010 106 N 0.017 0.002 0.031 0.005 0.018 0.841 0.002 0.001 0.002 0.019 0.036 0.016 0.013 107 N 0.017 0.002 0.035 0.002 0.027 0.788 0.001 0.001 0.002 0.022 0.077 0.010 0.017 108 T 0.019 0.006 0.058 0.001 0.041 0.615 0.001 0.001 0.003 0.051 0.160 0.012 0.030 109 Y 0.013 0.011 0.084 0.006 0.065 0.424 0.002 0.001 0.003 0.067 0.281 0.017 0.026 110 G 0.013 0.005 0.162 0.004 0.078 0.272 0.001 0.001 0.002 0.108 0.315 0.019 0.022 111 Q 0.014 0.032 0.247 0.005 0.071 0.203 0.001 0.001 0.002 0.186 0.136 0.015 0.087 112 F 0.006 0.068 0.383 0.004 0.041 0.092 0.001 0.001 0.002 0.191 0.103 0.054 0.055 113 P 0.001 0.007 0.120 0.004 0.038 0.033 0.001 0.001 0.001 0.207 0.576 0.006 0.008 114 D 0.001 0.003 0.070 0.005 0.034 0.011 0.001 0.001 0.001 0.202 0.668 0.001 0.004 115 H 0.007 0.012 0.352 0.003 0.126 0.022 0.002 0.002 0.015 0.216 0.161 0.037 0.046 116 A 0.019 0.109 0.391 0.006 0.098 0.021 0.011 0.017 0.079 0.062 0.053 0.020 0.113 117 L 0.023 0.071 0.333 0.030 0.093 0.021 0.010 0.005 0.072 0.114 0.081 0.079 0.068 118 L 0.004 0.016 0.702 0.002 0.017 0.009 0.001 0.001 0.033 0.088 0.016 0.039 0.072 119 L 0.002 0.008 0.236 0.007 0.059 0.042 0.001 0.001 0.006 0.242 0.353 0.015 0.029 120 G 0.002 0.024 0.204 0.004 0.060 0.039 0.001 0.001 0.004 0.286 0.344 0.012 0.021 121 E 0.001 0.021 0.664 0.001 0.028 0.031 0.001 0.001 0.007 0.174 0.037 0.015 0.020 122 T 0.001 0.031 0.843 0.001 0.011 0.021 0.001 0.001 0.015 0.020 0.026 0.004 0.028 123 Q 0.001 0.003 0.976 0.001 0.002 0.006 0.001 0.001 0.001 0.004 0.002 0.001 0.004