# TARGET T0602 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0602.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 35.8415 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 S 0.495 0.093 0.171 0.130 0.035 0.022 0.024 0.010 0.011 0.009 0.001 2 N 0.396 0.047 0.097 0.182 0.031 0.029 0.170 0.021 0.020 0.007 0.001 3 A 0.497 0.050 0.111 0.286 0.015 0.017 0.012 0.004 0.006 0.002 0.001 4 M 0.249 0.095 0.334 0.127 0.067 0.033 0.027 0.010 0.030 0.028 0.001 5 E 0.787 0.009 0.058 0.111 0.004 0.011 0.010 0.003 0.002 0.003 0.001 6 R 0.506 0.029 0.099 0.258 0.015 0.023 0.035 0.011 0.018 0.005 0.001 7 H 0.679 0.019 0.077 0.159 0.005 0.025 0.017 0.006 0.010 0.003 0.001 8 Q 0.884 0.014 0.045 0.040 0.003 0.006 0.004 0.002 0.001 0.001 0.001 9 H 0.920 0.007 0.019 0.028 0.003 0.008 0.008 0.004 0.002 0.001 0.001 10 L 0.980 0.002 0.003 0.012 0.001 0.002 0.001 0.001 0.001 0.001 0.001 11 L 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 S 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 E 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 Y 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 Q 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 Q 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 I 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 18 L 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 T 0.989 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 20 L 0.954 0.001 0.004 0.038 0.001 0.001 0.001 0.001 0.001 0.001 0.001 21 S 0.936 0.003 0.022 0.030 0.002 0.002 0.001 0.001 0.003 0.001 0.001 22 E 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 23 Q 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 24 M 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 25 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 26 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 L 0.980 0.001 0.001 0.020 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 A 0.927 0.002 0.015 0.046 0.001 0.003 0.003 0.001 0.002 0.001 0.001 29 T 0.851 0.004 0.010 0.128 0.001 0.002 0.002 0.001 0.001 0.001 0.001 30 E 0.361 0.024 0.057 0.509 0.026 0.005 0.010 0.004 0.003 0.002 0.001 31 G 0.074 0.015 0.081 0.052 0.120 0.006 0.124 0.423 0.004 0.102 0.001 32 N 0.115 0.065 0.217 0.042 0.052 0.376 0.025 0.002 0.095 0.010 0.001 33 W 0.989 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 34 D 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 35 A 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 36 L 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 37 V 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 D 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 L 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 E 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 M 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 42 T 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 Y 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 K 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 A 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 47 V 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 48 E 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 49 S 0.965 0.001 0.001 0.031 0.001 0.001 0.001 0.001 0.001 0.001 0.001 50 T 0.844 0.005 0.011 0.135 0.001 0.002 0.001 0.001 0.001 0.001 0.001 51 A 0.842 0.015 0.057 0.072 0.004 0.002 0.004 0.001 0.001 0.001 0.001 52 N 0.318 0.009 0.036 0.470 0.006 0.023 0.103 0.025 0.010 0.001 0.001 53 I 0.084 0.189 0.560 0.067 0.012 0.049 0.006 0.001 0.031 0.001 0.001 54 T 0.128 0.280 0.373 0.071 0.035 0.074 0.011 0.003 0.022 0.003 0.001 55 I 0.163 0.348 0.275 0.074 0.043 0.035 0.011 0.002 0.045 0.004 0.001 56 S 0.244 0.101 0.410 0.087 0.055 0.039 0.017 0.015 0.020 0.010 0.003 57 S 0.364 0.094 0.247 0.135 0.070 0.030 0.014 0.015 0.014 0.016 0.001 58 C 0.320 0.084 0.246 0.179 0.055 0.029 0.031 0.017 0.019 0.020 0.003 59 S 0.276 0.061 0.352 0.167 0.050 0.034 0.020 0.013 0.010 0.015 0.002 60 S 0.254 0.081 0.467 0.049 0.058 0.044 0.008 0.005 0.022 0.012 0.001 61 L 0.968 0.002 0.008 0.016 0.001 0.002 0.001 0.001 0.001 0.001 0.001 62 M 0.987 0.001 0.003 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 63 L 0.971 0.001 0.001 0.024 0.001 0.001 0.001 0.001 0.001 0.001 0.001 64 Q 0.994 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 65 D 0.993 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 66 L 0.992 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 67 L 0.993 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 68 R 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 69 E 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 70 K 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 71 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 72 R 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 73 A 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 74 I 0.987 0.001 0.001 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 75 L 0.933 0.001 0.003 0.061 0.001 0.001 0.001 0.001 0.001 0.001 0.001 76 D 0.919 0.001 0.019 0.051 0.001 0.003 0.005 0.001 0.001 0.001 0.001 77 N 0.400 0.007 0.035 0.422 0.005 0.072 0.007 0.005 0.047 0.002 0.001 78 E 0.963 0.002 0.007 0.019 0.001 0.006 0.001 0.001 0.001 0.001 0.001 79 I 0.993 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 80 E 0.992 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 81 I 0.995 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 82 K 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 83 R 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 84 L 0.995 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 85 L 0.976 0.001 0.001 0.024 0.001 0.001 0.001 0.001 0.001 0.001 0.001 86 Q 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 87 L 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 88 R 0.962 0.001 0.001 0.037 0.001 0.001 0.001 0.001 0.001 0.001 0.001 89 L 0.982 0.001 0.001 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 90 D 0.988 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 91 R 0.984 0.001 0.001 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 92 L 0.990 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 93 S 0.994 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 94 D 0.990 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 95 L 0.965 0.001 0.001 0.032 0.001 0.001 0.001 0.001 0.001 0.001 0.001 96 V 0.723 0.008 0.022 0.240 0.001 0.002 0.001 0.001 0.002 0.001 0.001 97 G 0.510 0.008 0.034 0.125 0.012 0.009 0.124 0.146 0.005 0.026 0.001 98 Q 0.427 0.093 0.134 0.249 0.015 0.043 0.017 0.002 0.018 0.002 0.001 99 S 0.523 0.089 0.168 0.136 0.033 0.028 0.010 0.004 0.006 0.003 0.001 100 T 0.746 0.042 0.040 0.122 0.024 0.006 0.007 0.005 0.004 0.002 0.001 101 K 0.758 0.073 0.060 0.055 0.022 0.008 0.009 0.006 0.007 0.003 0.001 102 Q 0.749 0.083 0.090 0.044 0.004 0.018 0.004 0.001 0.007 0.001 0.001 103 Q 0.753 0.110 0.086 0.017 0.009 0.012 0.004 0.001 0.009 0.001 0.001 104 A 0.783 0.095 0.084 0.010 0.011 0.011 0.002 0.001 0.003 0.001 0.001 105 V 0.888 0.045 0.018 0.035 0.003 0.006 0.001 0.001 0.005 0.001 0.001 106 N 0.821 0.043 0.035 0.064 0.006 0.013 0.005 0.001 0.012 0.001 0.001 107 N 0.801 0.029 0.031 0.074 0.014 0.013 0.025 0.004 0.008 0.002 0.001 108 T 0.701 0.045 0.051 0.175 0.010 0.007 0.005 0.002 0.003 0.001 0.001 109 Y 0.284 0.091 0.097 0.382 0.047 0.011 0.048 0.013 0.024 0.003 0.001 110 G 0.136 0.027 0.094 0.042 0.104 0.006 0.085 0.257 0.003 0.246 0.001 111 Q 0.213 0.199 0.254 0.194 0.034 0.065 0.015 0.003 0.019 0.004 0.001 112 F 0.049 0.234 0.341 0.006 0.034 0.028 0.025 0.001 0.278 0.004 0.001 113 P 0.483 0.002 0.417 0.018 0.001 0.017 0.001 0.001 0.001 0.001 0.059 114 D 0.350 0.052 0.083 0.314 0.036 0.017 0.063 0.070 0.010 0.005 0.001 115 H 0.092 0.307 0.218 0.130 0.090 0.040 0.065 0.010 0.044 0.003 0.001 116 A 0.106 0.467 0.303 0.038 0.027 0.031 0.006 0.001 0.019 0.001 0.001 117 L 0.078 0.484 0.299 0.024 0.039 0.046 0.003 0.001 0.025 0.001 0.001 118 L 0.060 0.364 0.369 0.023 0.022 0.073 0.007 0.001 0.080 0.001 0.002 119 L 0.170 0.078 0.627 0.065 0.013 0.026 0.007 0.001 0.008 0.002 0.003 120 G 0.080 0.015 0.079 0.038 0.067 0.006 0.072 0.489 0.004 0.149 0.001 121 E 0.211 0.160 0.497 0.051 0.033 0.020 0.006 0.002 0.014 0.004 0.001 122 T 0.244 0.108 0.386 0.143 0.023 0.051 0.016 0.006 0.014 0.004 0.004 123 Q 0.268 0.172 0.235 0.140 0.066 0.037 0.034 0.013 0.025 0.009 0.001