# List of top-scoring protein chains for t2k-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3h3mA 126 3.09e-10 2jg0A 535 9.50e-02 a.102.1.9 148034 2jx0A 135 7.63e-01 2qk2A 242 4.25e+00 2crbA 97 5.39e+00 a.7.16.1 130737 2cy8A 453 6.07e+00 2gf4A 100 7.18e+00 a.8.10.1 135074 2ccyA 128 7.80e+00 2ccyA a.24.3.2 16544 2a1dD 329 8.58e+00 3dplC 382 8.60e+00 1b3uA 588 9.49e+00 1b3uA a.118.1.2 19135 1o9iA 266 1.04e+01 a.25.1.3 92671 2rd3A 223 1.04e+01 3eb2A 300 1.05e+01 1jkvA 266 1.07e+01 a.25.1.3 71719 1nu7D 282 1.13e+01 a.8.6.1,a.8.6.1 92191,92192 1sqsA 242 1.13e+01 c.23.5.5 98968 3erdA 261 1.15e+01 3erdA a.123.1.1 19293 2bcqA 335 1.17e+01 a.60.6.1,a.60.12.1,d.218.1.2 128304,128305,128306 3mghA 329 1.19e+01 3cp5A 124 1.19e+01 1xpcA 248 1.21e+01 a.123.1.1 115738 3ibxA 221 1.26e+01 2oy9A 98 1.26e+01 a.276.1.1 149063 2peqA 134 1.39e+01 a.280.1.1 149443 1rztA 331 1.40e+01 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 2ie4A 589 1.41e+01 a.118.1.2 137291 1pd3A 58 1.41e+01 a.30.3.1 94512 1eyhA 144 1.42e+01 1eduA a.118.9.1 19214 1b9xC 246 1.45e+01 1b9yC c.47.1.6 33053 3hjeA 704 1.47e+01 2f6hX 419 1.47e+01 1b3bA 415 1.51e+01 1hwyA c.2.1.7,c.58.1.1 30244,33892 2of3A 266 1.59e+01 1eduA 149 1.59e+01 1eduA a.118.9.1 19215 1ufaA 520 1.60e+01 a.8.3.3,c.6.2.4 99329,99330 1l2iA 261 1.61e+01 a.123.1.1 73503 2qcxA 263 1.63e+01 2qqyA 149 1.65e+01 1n1jB 97 1.90e+01 a.22.1.3 79814 1h0aA 158 1.97e+01 a.118.9.1 76434 1dmgA 225 2.07e+01 1dmgA c.22.1.1 31036 3lkeA 263 2.15e+01 1x1nA 524 2.18e+01 c.1.8.1 121593 1jr3A 373 2.27e+01 a.80.1.1,c.37.1.20 63245,63246 1qbkB 890 2.34e+01 1qbkB a.118.1.1 19127 2fjbA 643 2.35e+01 2ux0A 143 2.38e+01 d.17.4.7 152231 1n8vA 112 2.38e+01 a.118.21.1 85457 1b26A 416 2.40e+01 1hwyA c.2.1.7,c.58.1.1 30232,33880 1a52A 258 2.42e+01 3erdA a.123.1.1 19296 3dghA 483 2.48e+01 2z5kA 890 2.49e+01 2h88C 140 2.51e+01 3bc1B 59 2.58e+01 3hr0A 263 2.61e+01 3ertA 261 2.62e+01 3erdA a.123.1.1 19292 1jnrA 643 2.64e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1b8gA 429 2.66e+01 1b8gA c.67.1.4 34499 2nl9A 157 2.67e+01 3favA 101 2.81e+01 2boyA 254 2.82e+01 2fbwC 141 2.91e+01 2iazA 113 2.92e+01 a.281.1.2 147593 2g0dA 409 2.93e+01 a.102.6.1 147057 1jocA 125 2.95e+01 g.50.1.1,h.1.21.1 66990,66991 1a0rP 245 2.97e+01 1b9yC c.47.1.6 33054 2vj4A 294 3.02e+01 2hkjA 469 3.02e+01 a.156.1.3,d.14.1.3,d.122.1.2 136553,136554,136555 1mu5A 471 3.03e+01 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 1ihgA 370 3.13e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 3cjhB 64 3.15e+01 1tyhA 248 3.18e+01 a.132.1.3 107458 1ykhB 132 3.24e+01 a.252.1.1 123519 1mx0A 472 3.28e+01 a.156.1.3,d.14.1.3,d.122.1.2 79618,79619,79620 2v6xA 85 3.28e+01 1vd5A 377 3.33e+01 a.102.1.7 108518 1orsC 132 3.39e+01 f.14.1.1 87353 3hx0A 335 3.51e+01 2ozbB 260 3.52e+01 a.183.1.1 145742 1m7yA 435 3.54e+01 c.67.1.4 78761 3ip4C 100 3.56e+01 1i7dA 659 3.58e+01 1d6mA e.10.1.1 61886 2o5cA 659 3.59e+01 3f2bA 1041 3.64e+01 3ivyA 433 3.70e+01 1hs7A 97 3.77e+01 1hs7A a.47.2.1 61236 2gscA 128 3.79e+01 a.29.16.1 147169 1b5tA 275 3.80e+01 1b5tA c.1.23.1 29676 1zt2B 212 3.89e+01 a.262.1.1 125625 1xgwA 176 3.89e+01 2pqxA 245 3.91e+01 2wb7A 526 4.00e+01 1bs0A 384 4.02e+01 1bs0A c.67.1.4 34490 3iuzA 340 4.07e+01 1uzeA 589 4.15e+01 d.92.1.5 108174 1pq1A 196 4.29e+01 f.1.4.1 94986 1maz 221 4.30e+01 1maz 2k37A 59 4.32e+01 3ltoA 323 4.34e+01 1d6mA 653 4.44e+01 1d6mA e.10.1.1 43248 1b9yC 246 4.53e+01 1b9yC c.47.1.6 33052 2df8A 325 4.56e+01 2e5fA 325 4.57e+01 1fcyA 236 4.57e+01 2lbd a.123.1.1 19282 2dobA 83 4.60e+01 2be3A 226 4.67e+01 d.218.1.8 128349 2avkA 136 4.68e+01 2lbd 267 4.69e+01 2lbd 1ek9A 428 4.70e+01 1ek9A f.5.1.1 43809 1ux8A 132 4.75e+01 a.1.1.1 113449 1sg6A 393 4.75e+01 e.22.1.1 105522 1t0qA 498 4.81e+01 a.25.1.2 106220 3jrqA 326 4.89e+01 2incA 491 4.91e+01 a.25.1.2 137524 3fwyA 314 4.93e+01 1ynuA 473 4.93e+01 c.67.1.4 123762 3kwqB 83 5.02e+01 2hueC 84 5.04e+01 a.22.1.1 136776 3fydA 263 5.13e+01 3gruA 295 5.21e+01 2cb0A 333 5.36e+01 3h02A 288 5.37e+01 1aoiB 87 5.38e+01 1aoiB a.22.1.1 16470 1kx5B 102 5.39e+01 a.22.1.1 77594 1t5oA 351 5.42e+01 c.124.1.5 106459 2dpoA 319 5.44e+01 1tzyD 103 5.45e+01 a.22.1.1 107533 2ax8A 256 5.48e+01 3cqxC 88 5.50e+01 2g7lA 243 5.55e+01 a.4.1.9,a.121.1.1 134734,134735 1zroA 602 5.61e+01 a.264.1.1,a.264.1.1 125551,125552 1hkxA 147 5.66e+01 d.17.4.7 83567 1fjgM 126 5.69e+01 1fjfM a.156.1.1 16293 1dt9A 437 5.71e+01 1dt9A c.55.4.2,d.79.3.2,d.91.1.1 33738,39815,40257 2qzcA 214 5.72e+01 1d3yA 301 5.77e+01 1d3yA e.12.1.1 43252 1cii 602 5.77e+01 1cii 1ciiA 602 5.77e+01 f.1.1.1,h.4.3.1 43381,45787 2ffeA 311 5.84e+01 c.143.1.1 133381 1eerA 166 5.85e+01 1eerA a.26.1.2 16846 2ax9A 256 5.87e+01 a.123.1.1 127481 3adoA 319 5.97e+01 1q5zA 177 5.98e+01 a.196.1.1 95954 1w2fA 276 6.08e+01 d.143.1.3 109125 1wixA 164 6.11e+01 a.40.3.1 114683 1xdpA 687 6.13e+01 a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4 121896,121897,121898,121899 2bneA 241 6.13e+01 c.73.1.3 128824 1edoA 244 6.21e+01 1ybvA c.2.1.2 29896 1i7gA 287 6.24e+01 a.123.1.1 71121 3stdA 165 6.37e+01 3stdA d.17.4.1 38073 3c3dA 311 6.43e+01 3ilcA 197 6.46e+01 3l1nA 194 6.46e+01 3hhyA 280 6.58e+01 3kdjB 316 6.76e+01 1qgdA 662 6.88e+01 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 1idpA 172 6.96e+01 d.17.4.1 83685 1a76 326 6.99e+01 1a76 1a76A 326 6.99e+01 a.60.7.1,c.120.1.2 18091,33361 2fztA 79 7.02e+01 a.46.3.1 134476 2f31A 233 7.09e+01 2oyoA 196 7.11e+01 a.152.1.3 149068 1fe6C 52 7.11e+01 1fe6C h.1.19.1 45664 3a1gB 40 7.12e+01 2wm5A 435 7.16e+01 1std 172 7.16e+01 3stdA 2dpmA 284 7.31e+01 2dpmA c.66.1.28 34246 1fe6A 52 7.32e+01 1fe6A h.1.19.1 45662 2cfuA 658 7.43e+01 d.106.1.3,d.157.1.13 146386,146387 1ybkA 52 7.45e+01 1iv8A 720 7.45e+01 b.71.1.1,c.1.8.1 76842,76843 3h0lC 94 7.46e+01 2qkwA 164 7.59e+01 a.8.8.1 150848 3echC 25 7.68e+01 3ksyA 1049 7.72e+01 2ahfA 377 7.78e+01 3l09A 266 7.79e+01 1a8h 500 7.86e+01 1a8h 1v7nV 163 7.92e+01 a.26.1.2 100476