# TARGET T0602 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0602.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 64.8643 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 S 0.006 0.002 0.021 0.048 0.027 0.052 0.843 2 N 0.015 0.022 0.064 0.095 0.046 0.136 0.622 3 A 0.015 0.013 0.105 0.103 0.081 0.182 0.500 4 M 0.014 0.007 0.119 0.113 0.097 0.140 0.510 5 E 0.013 0.021 0.108 0.182 0.115 0.227 0.334 6 R 0.008 0.011 0.080 0.133 0.246 0.190 0.332 7 H 0.004 0.003 0.076 0.487 0.063 0.091 0.277 8 Q 0.001 0.002 0.055 0.858 0.021 0.027 0.037 9 H 0.001 0.003 0.052 0.865 0.014 0.035 0.029 10 L 0.001 0.001 0.013 0.960 0.003 0.015 0.008 11 L 0.001 0.001 0.003 0.990 0.001 0.003 0.002 12 S 0.001 0.001 0.003 0.993 0.001 0.003 0.001 13 E 0.001 0.001 0.002 0.988 0.001 0.009 0.001 14 Y 0.001 0.001 0.001 0.995 0.001 0.004 0.001 15 Q 0.001 0.001 0.001 0.999 0.001 0.001 0.001 16 Q 0.001 0.001 0.001 0.998 0.001 0.001 0.001 17 I 0.001 0.001 0.001 0.996 0.001 0.004 0.001 18 L 0.001 0.001 0.001 0.991 0.001 0.007 0.001 19 T 0.001 0.001 0.002 0.955 0.001 0.041 0.001 20 L 0.001 0.001 0.002 0.930 0.004 0.055 0.009 21 S 0.001 0.001 0.001 0.963 0.006 0.014 0.016 22 E 0.001 0.001 0.001 0.997 0.001 0.002 0.001 23 Q 0.001 0.001 0.002 0.995 0.001 0.003 0.001 24 M 0.001 0.001 0.002 0.994 0.001 0.004 0.001 25 L 0.001 0.001 0.001 0.994 0.001 0.004 0.001 26 V 0.001 0.001 0.001 0.990 0.001 0.009 0.001 27 L 0.001 0.001 0.001 0.989 0.001 0.009 0.001 28 A 0.001 0.001 0.004 0.966 0.006 0.019 0.005 29 T 0.001 0.002 0.010 0.842 0.010 0.126 0.011 30 E 0.001 0.001 0.010 0.319 0.015 0.648 0.006 31 G 0.001 0.001 0.002 0.096 0.097 0.767 0.036 32 N 0.003 0.012 0.002 0.071 0.160 0.029 0.723 33 W 0.001 0.001 0.005 0.979 0.002 0.006 0.008 34 D 0.001 0.001 0.004 0.992 0.001 0.002 0.001 35 A 0.001 0.001 0.005 0.993 0.001 0.001 0.001 36 L 0.001 0.001 0.001 0.996 0.001 0.001 0.001 37 V 0.001 0.001 0.001 0.996 0.001 0.003 0.001 38 D 0.001 0.001 0.001 0.994 0.001 0.005 0.001 39 L 0.001 0.001 0.001 0.988 0.001 0.009 0.002 40 E 0.001 0.001 0.001 0.993 0.001 0.005 0.001 41 M 0.001 0.001 0.001 0.999 0.001 0.001 0.001 42 T 0.001 0.001 0.001 0.998 0.001 0.001 0.001 43 Y 0.001 0.001 0.001 0.997 0.001 0.002 0.001 44 L 0.001 0.001 0.001 0.999 0.001 0.001 0.001 45 K 0.001 0.001 0.001 0.998 0.001 0.001 0.001 46 A 0.001 0.001 0.001 0.996 0.001 0.004 0.001 47 V 0.001 0.001 0.001 0.993 0.001 0.006 0.001 48 E 0.001 0.001 0.003 0.982 0.001 0.013 0.001 49 S 0.001 0.001 0.005 0.963 0.001 0.027 0.004 50 T 0.001 0.001 0.015 0.899 0.007 0.050 0.027 51 A 0.002 0.002 0.033 0.675 0.021 0.230 0.037 52 N 0.008 0.003 0.051 0.307 0.050 0.483 0.098 53 I 0.023 0.011 0.020 0.152 0.201 0.080 0.514 54 T 0.034 0.013 0.021 0.092 0.122 0.089 0.630 55 I 0.027 0.027 0.064 0.171 0.157 0.102 0.453 56 S 0.023 0.015 0.103 0.117 0.128 0.096 0.517 57 S 0.015 0.010 0.109 0.175 0.142 0.231 0.318 58 C 0.012 0.013 0.055 0.163 0.096 0.168 0.493 59 S 0.006 0.009 0.026 0.229 0.180 0.064 0.486 60 S 0.003 0.004 0.009 0.487 0.091 0.041 0.365 61 L 0.001 0.001 0.007 0.940 0.010 0.021 0.022 62 M 0.001 0.001 0.004 0.968 0.004 0.010 0.013 63 L 0.001 0.001 0.004 0.980 0.001 0.007 0.008 64 Q 0.001 0.001 0.002 0.985 0.001 0.008 0.003 65 D 0.001 0.001 0.002 0.979 0.001 0.016 0.002 66 L 0.001 0.001 0.005 0.957 0.002 0.027 0.008 67 L 0.001 0.001 0.006 0.950 0.002 0.036 0.007 68 R 0.001 0.001 0.004 0.981 0.002 0.008 0.004 69 E 0.001 0.001 0.003 0.989 0.001 0.007 0.001 70 K 0.001 0.001 0.002 0.987 0.001 0.010 0.001 71 L 0.001 0.001 0.001 0.993 0.001 0.005 0.001 72 R 0.001 0.001 0.002 0.996 0.001 0.002 0.001 73 A 0.001 0.001 0.003 0.983 0.001 0.014 0.001 74 I 0.001 0.001 0.002 0.971 0.001 0.026 0.001 75 L 0.001 0.001 0.002 0.977 0.003 0.015 0.004 76 D 0.001 0.001 0.005 0.968 0.002 0.022 0.004 77 N 0.001 0.001 0.003 0.962 0.003 0.026 0.005 78 E 0.001 0.001 0.002 0.987 0.001 0.009 0.002 79 I 0.001 0.001 0.002 0.988 0.001 0.009 0.001 80 E 0.001 0.001 0.003 0.980 0.001 0.015 0.002 81 I 0.001 0.001 0.004 0.981 0.001 0.010 0.004 82 K 0.001 0.001 0.004 0.986 0.001 0.007 0.001 83 R 0.001 0.001 0.006 0.977 0.001 0.014 0.002 84 L 0.001 0.001 0.009 0.973 0.001 0.015 0.002 85 L 0.001 0.001 0.009 0.968 0.003 0.017 0.003 86 Q 0.001 0.001 0.018 0.921 0.011 0.038 0.010 87 L 0.001 0.001 0.033 0.858 0.010 0.088 0.010 88 R 0.001 0.001 0.030 0.814 0.010 0.124 0.021 89 L 0.001 0.001 0.021 0.944 0.006 0.018 0.011 90 D 0.001 0.001 0.020 0.958 0.003 0.016 0.003 91 R 0.001 0.001 0.010 0.958 0.002 0.026 0.003 92 L 0.001 0.001 0.005 0.982 0.001 0.009 0.003 93 S 0.001 0.001 0.008 0.985 0.001 0.005 0.001 94 D 0.001 0.001 0.009 0.972 0.001 0.018 0.001 95 L 0.001 0.001 0.018 0.938 0.002 0.036 0.006 96 V 0.001 0.002 0.028 0.819 0.012 0.123 0.015 97 G 0.001 0.001 0.026 0.466 0.017 0.430 0.058 98 Q 0.002 0.001 0.017 0.505 0.072 0.150 0.253 99 S 0.003 0.003 0.010 0.573 0.086 0.076 0.248 100 T 0.004 0.004 0.017 0.712 0.065 0.091 0.106 101 K 0.007 0.002 0.015 0.841 0.032 0.050 0.053 102 Q 0.013 0.003 0.012 0.897 0.016 0.016 0.043 103 Q 0.022 0.002 0.011 0.904 0.015 0.013 0.033 104 A 0.025 0.004 0.012 0.895 0.013 0.015 0.035 105 V 0.021 0.003 0.019 0.899 0.010 0.026 0.021 106 N 0.026 0.003 0.041 0.824 0.018 0.069 0.019 107 N 0.029 0.002 0.078 0.676 0.018 0.168 0.028 108 T 0.038 0.012 0.111 0.570 0.038 0.134 0.097 109 Y 0.038 0.015 0.130 0.346 0.111 0.218 0.141 110 G 0.033 0.014 0.103 0.127 0.223 0.245 0.255 111 Q 0.050 0.025 0.060 0.077 0.278 0.106 0.404 112 F 0.052 0.025 0.025 0.021 0.281 0.040 0.556 113 P 0.022 0.008 0.091 0.046 0.128 0.537 0.167 114 D 0.036 0.009 0.102 0.039 0.185 0.487 0.142 115 H 0.166 0.019 0.069 0.044 0.273 0.072 0.357 116 A 0.424 0.042 0.029 0.032 0.083 0.046 0.344 117 L 0.593 0.047 0.018 0.030 0.051 0.024 0.237 118 L 0.590 0.068 0.011 0.023 0.034 0.022 0.252 119 L 0.320 0.027 0.030 0.046 0.072 0.241 0.263 120 G 0.115 0.012 0.039 0.015 0.238 0.328 0.254 121 E 0.078 0.018 0.060 0.015 0.290 0.125 0.414 122 T 0.060 0.037 0.026 0.013 0.096 0.059 0.708 123 Q 0.014 0.007 0.007 0.005 0.027 0.010 0.930