# TARGET T0602 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0602.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 64.8643 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 S 0.499 0.080 0.177 0.139 0.026 0.028 0.024 0.010 0.010 0.006 0.001 2 N 0.443 0.078 0.174 0.102 0.036 0.033 0.087 0.009 0.032 0.006 0.001 3 A 0.618 0.033 0.131 0.175 0.007 0.020 0.005 0.003 0.005 0.001 0.002 4 M 0.504 0.076 0.187 0.117 0.033 0.025 0.017 0.005 0.022 0.013 0.001 5 E 0.739 0.013 0.086 0.123 0.005 0.017 0.008 0.002 0.003 0.002 0.002 6 R 0.512 0.038 0.103 0.216 0.023 0.029 0.040 0.011 0.022 0.005 0.001 7 H 0.735 0.016 0.060 0.131 0.004 0.024 0.013 0.005 0.009 0.003 0.001 8 Q 0.933 0.007 0.021 0.026 0.002 0.004 0.003 0.002 0.001 0.001 0.001 9 H 0.963 0.002 0.007 0.017 0.001 0.004 0.004 0.002 0.001 0.001 0.001 10 L 0.988 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 S 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 E 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 Y 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 Q 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 Q 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 I 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 18 L 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 T 0.991 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 20 L 0.963 0.001 0.003 0.033 0.001 0.001 0.001 0.001 0.001 0.001 0.001 21 S 0.954 0.002 0.011 0.029 0.001 0.002 0.001 0.001 0.002 0.001 0.001 22 E 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 23 Q 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 24 M 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 25 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 26 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 L 0.984 0.001 0.001 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 A 0.943 0.002 0.009 0.040 0.001 0.002 0.002 0.001 0.002 0.001 0.001 29 T 0.846 0.004 0.010 0.132 0.001 0.002 0.003 0.001 0.001 0.001 0.001 30 E 0.416 0.023 0.057 0.455 0.025 0.005 0.009 0.004 0.003 0.002 0.001 31 G 0.088 0.015 0.077 0.062 0.125 0.006 0.118 0.394 0.004 0.111 0.001 32 N 0.087 0.053 0.172 0.040 0.044 0.444 0.026 0.001 0.123 0.009 0.001 33 W 0.986 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 34 D 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 35 A 0.992 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 36 L 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 37 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 D 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 L 0.994 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 E 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 M 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 42 T 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 Y 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 K 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 47 V 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 48 E 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 49 S 0.977 0.001 0.001 0.021 0.001 0.001 0.001 0.001 0.001 0.001 0.001 50 T 0.860 0.003 0.009 0.124 0.001 0.001 0.001 0.001 0.001 0.001 0.001 51 A 0.845 0.012 0.053 0.077 0.004 0.002 0.004 0.001 0.001 0.001 0.001 52 N 0.322 0.007 0.035 0.445 0.005 0.025 0.121 0.029 0.010 0.001 0.001 53 I 0.095 0.188 0.536 0.084 0.014 0.049 0.006 0.001 0.028 0.001 0.001 54 T 0.116 0.232 0.377 0.087 0.054 0.084 0.016 0.005 0.023 0.004 0.001 55 I 0.222 0.294 0.253 0.101 0.043 0.032 0.011 0.003 0.037 0.004 0.001 56 S 0.273 0.084 0.326 0.138 0.060 0.038 0.026 0.020 0.023 0.010 0.002 57 S 0.367 0.088 0.247 0.147 0.061 0.030 0.014 0.016 0.014 0.014 0.001 58 C 0.323 0.088 0.238 0.203 0.045 0.025 0.028 0.016 0.017 0.016 0.003 59 S 0.181 0.071 0.454 0.129 0.064 0.037 0.021 0.012 0.011 0.016 0.002 60 S 0.110 0.072 0.634 0.022 0.052 0.064 0.004 0.002 0.030 0.009 0.001 61 L 0.985 0.001 0.003 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 62 M 0.993 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 63 L 0.975 0.001 0.001 0.023 0.001 0.001 0.001 0.001 0.001 0.001 0.001 64 Q 0.994 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 65 D 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 66 L 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 67 L 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 68 R 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 69 E 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 70 K 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 71 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 72 R 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 73 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 74 I 0.990 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 75 L 0.948 0.001 0.002 0.047 0.001 0.001 0.001 0.001 0.001 0.001 0.001 76 D 0.906 0.001 0.018 0.065 0.001 0.002 0.004 0.001 0.001 0.001 0.001 77 N 0.306 0.008 0.048 0.437 0.006 0.098 0.006 0.003 0.084 0.002 0.001 78 E 0.965 0.001 0.006 0.021 0.001 0.005 0.001 0.001 0.001 0.001 0.001 79 I 0.993 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 80 E 0.990 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 81 I 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 82 K 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 83 R 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 84 L 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 85 L 0.979 0.001 0.001 0.020 0.001 0.001 0.001 0.001 0.001 0.001 0.001 86 Q 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 87 L 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 88 R 0.971 0.001 0.001 0.028 0.001 0.001 0.001 0.001 0.001 0.001 0.001 89 L 0.988 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 90 D 0.991 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 91 R 0.981 0.001 0.001 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.001 92 L 0.990 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 93 S 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 94 D 0.991 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 95 L 0.976 0.001 0.001 0.023 0.001 0.001 0.001 0.001 0.001 0.001 0.001 96 V 0.773 0.005 0.012 0.205 0.001 0.002 0.001 0.001 0.002 0.001 0.001 97 G 0.694 0.006 0.032 0.118 0.007 0.006 0.066 0.056 0.003 0.012 0.001 98 Q 0.482 0.047 0.082 0.313 0.011 0.026 0.019 0.005 0.012 0.002 0.001 99 S 0.492 0.077 0.204 0.129 0.026 0.040 0.016 0.005 0.009 0.003 0.001 100 T 0.718 0.042 0.062 0.116 0.024 0.010 0.011 0.005 0.006 0.003 0.001 101 K 0.828 0.027 0.035 0.065 0.011 0.007 0.011 0.007 0.005 0.003 0.001 102 Q 0.839 0.036 0.046 0.057 0.003 0.010 0.004 0.001 0.003 0.001 0.001 103 Q 0.841 0.057 0.056 0.021 0.007 0.008 0.004 0.001 0.005 0.001 0.001 104 A 0.873 0.049 0.047 0.011 0.007 0.007 0.002 0.001 0.002 0.001 0.001 105 V 0.928 0.023 0.011 0.030 0.002 0.004 0.001 0.001 0.003 0.001 0.001 106 N 0.902 0.023 0.021 0.038 0.003 0.006 0.003 0.001 0.004 0.001 0.001 107 N 0.849 0.015 0.018 0.071 0.007 0.009 0.022 0.003 0.006 0.001 0.001 108 T 0.736 0.037 0.049 0.156 0.007 0.006 0.004 0.001 0.003 0.001 0.001 109 Y 0.356 0.081 0.086 0.339 0.043 0.010 0.047 0.016 0.018 0.004 0.001 110 G 0.225 0.035 0.114 0.060 0.091 0.009 0.092 0.198 0.005 0.171 0.001 111 Q 0.220 0.243 0.255 0.162 0.037 0.049 0.010 0.003 0.017 0.003 0.001 112 F 0.055 0.205 0.328 0.009 0.034 0.033 0.033 0.001 0.297 0.004 0.001 113 P 0.432 0.003 0.462 0.020 0.001 0.016 0.001 0.001 0.001 0.001 0.063 114 D 0.346 0.065 0.079 0.350 0.038 0.022 0.040 0.044 0.012 0.003 0.001 115 H 0.065 0.443 0.243 0.058 0.082 0.025 0.023 0.002 0.057 0.001 0.001 116 A 0.134 0.274 0.492 0.027 0.013 0.040 0.003 0.001 0.014 0.001 0.002 117 L 0.091 0.492 0.258 0.041 0.043 0.042 0.003 0.001 0.027 0.001 0.001 118 L 0.051 0.439 0.306 0.025 0.039 0.059 0.009 0.001 0.070 0.001 0.001 119 L 0.122 0.159 0.574 0.066 0.013 0.044 0.003 0.001 0.014 0.001 0.003 120 G 0.095 0.068 0.158 0.022 0.213 0.007 0.038 0.123 0.010 0.264 0.001 121 E 0.281 0.117 0.398 0.083 0.035 0.037 0.013 0.003 0.019 0.005 0.010 122 T 0.311 0.119 0.278 0.199 0.026 0.033 0.011 0.006 0.013 0.003 0.002 123 Q 0.246 0.163 0.228 0.143 0.088 0.031 0.037 0.019 0.022 0.023 0.001