# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3h3mA 126 1.42e-10 2jg0A 535 3.54e-02 a.102.1.9 148034 2jx0A 135 8.06e-01 2crbA 97 3.85e+00 a.7.16.1 130737 2a1dD 329 3.98e+00 2qk2A 242 4.40e+00 1ufaA 520 5.09e+00 a.8.3.3,c.6.2.4 99329,99330 3eb2A 300 5.49e+00 1bs0A 384 5.57e+00 1bs0A c.67.1.4 34490 2of3A 266 5.66e+00 1eyhA 144 6.33e+00 1eduA a.118.9.1 19214 1nu7D 282 6.64e+00 a.8.6.1,a.8.6.1 92191,92192 2f6hX 419 7.22e+00 2ccyA 128 7.32e+00 2ccyA a.24.3.2 16544 1b3uA 588 8.31e+00 1b3uA a.118.1.2 19135 3dplC 382 8.66e+00 1d6mA 653 8.90e+00 1d6mA e.10.1.1 43248 1i7dA 659 1.01e+01 1d6mA e.10.1.1 61886 1fjgM 126 1.06e+01 1fjfM a.156.1.1 16293 2ie4A 589 1.15e+01 a.118.1.2 137291 2o5cA 659 1.16e+01 2qcxA 263 1.19e+01 2ajfA 597 1.28e+01 d.92.1.5 126882 2gscA 128 1.34e+01 a.29.16.1 147169 1pd3A 58 1.34e+01 a.30.3.1 94512 2avkA 136 1.35e+01 1r42A 615 1.37e+01 d.92.1.5 96968 1dmgA 225 1.39e+01 1dmgA c.22.1.1 31036 3cp5A 124 1.42e+01 2rd3A 223 1.48e+01 1ppjA 446 1.53e+01 d.185.1.1,d.185.1.1 104252,104253 1zt2B 212 1.57e+01 a.262.1.1 125625 3mghA 329 1.62e+01 2bcqA 335 1.66e+01 a.60.6.1,a.60.12.1,d.218.1.2 128304,128305,128306 3ip4C 100 1.71e+01 1rztA 331 1.74e+01 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 2oy9A 98 1.92e+01 a.276.1.1 149063 1ek9A 428 1.97e+01 1ek9A f.5.1.1 43809 2fjbA 643 1.99e+01 2gf4A 100 2.02e+01 a.8.10.1 135074 1uzeA 589 2.07e+01 d.92.1.5 108174 1ug7A 128 2.16e+01 a.24.24.1 107824 1jnrA 643 2.17e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 2ux0A 143 2.24e+01 d.17.4.7 152231 1w33A 181 2.25e+01 1b9xC 246 2.27e+01 1b9yC c.47.1.6 33053 2vj4A 294 2.27e+01 3fvcA 663 2.28e+01 2h88C 140 2.34e+01 1sqsA 242 2.35e+01 c.23.5.5 98968 3hjeA 704 2.37e+01 1vctA 205 2.40e+01 a.7.12.1,d.286.1.1 119986,119987 1zroA 602 2.42e+01 a.264.1.1,a.264.1.1 125551,125552 2be3A 226 2.46e+01 d.218.1.8 128349 1mu5A 471 2.53e+01 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 3ibxA 221 2.54e+01 2g7lA 243 2.55e+01 a.4.1.9,a.121.1.1 134734,134735 2hkjA 469 2.55e+01 a.156.1.3,d.14.1.3,d.122.1.2 136553,136554,136555 1qbkB 890 2.56e+01 1qbkB a.118.1.1 19127 3stdA 165 2.58e+01 3stdA d.17.4.1 38073 1xgwA 176 2.65e+01 1mx0A 472 2.71e+01 a.156.1.3,d.14.1.3,d.122.1.2 79618,79619,79620 1b5tA 275 2.74e+01 1b5tA c.1.23.1 29676 2fbwC 141 2.76e+01 1idpA 172 2.77e+01 d.17.4.1 83685 1fcyA 236 2.85e+01 2lbd a.123.1.1 19282 1k0iA 394 2.89e+01 c.3.1.2,d.16.1.2 67942,67943 1std 172 2.90e+01 3stdA 1n1jB 97 2.91e+01 a.22.1.3 79814 2nl9A 157 2.94e+01 2peqA 134 2.99e+01 a.280.1.1 149443 3dghA 483 3.05e+01 2df8A 325 3.06e+01 2e5fA 325 3.07e+01 3lkeA 263 3.11e+01 1ux8A 132 3.21e+01 a.1.1.1 113449 2z5kA 890 3.28e+01 1sg6A 393 3.36e+01 e.22.1.1 105522 1maz 221 3.40e+01 1maz 3ltoA 323 3.46e+01 2vdeA 460 3.50e+01 1pq1A 196 3.50e+01 f.1.4.1 94986 2i76A 276 3.56e+01 a.100.1.10,c.2.1.6 147535,147536 1a8h 500 3.57e+01 1a8h 3jrqA 326 3.62e+01 2cy8A 453 3.64e+01 2gwdA 449 3.84e+01 1cd3B 120 3.87e+01 1cd3B 2k37A 59 3.95e+01 1eerA 166 4.07e+01 1eerA a.26.1.2 16846 3l1nA 194 4.11e+01 2qzaA 618 4.21e+01 1go3F 107 4.25e+01 a.60.8.2 65407 2jabA 136 4.37e+01 2gs8A 317 4.38e+01 1pbe 394 4.40e+01 1pbe 1pbeA 394 4.40e+01 c.3.1.2,d.16.1.2 30338,37869 3bc1B 59 4.47e+01 1o9iA 266 4.59e+01 a.25.1.3 92671 3a03A 56 4.60e+01 3kwsA 287 4.68e+01 2v6xA 85 4.69e+01 1orsC 132 4.77e+01 f.14.1.1 87353 2dpoA 319 4.85e+01 1jkvA 266 4.88e+01 a.25.1.3 71719 1tyhA 248 4.88e+01 a.132.1.3 107458 1jocA 125 4.92e+01 g.50.1.1,h.1.21.1 66990,66991 2pqxA 245 4.94e+01 1a0rP 245 4.96e+01 1b9yC c.47.1.6 33054 1z8uA 102 5.00e+01 a.7.11.1 124724 2dpmA 284 5.01e+01 2dpmA c.66.1.28 34246 3iuzA 340 5.11e+01 1t0qA 498 5.16e+01 a.25.1.2 106220 2f2aC 100 5.20e+01 a.137.12.1 132804 2incA 491 5.23e+01 a.25.1.2 137524 1r4gA 53 5.26e+01 a.8.5.1 96996 1g7dA 106 5.27e+01 1g7dA a.71.1.1 18318 2wb7A 526 5.34e+01 1n8vA 112 5.37e+01 a.118.21.1 85457 3ic4A 92 5.38e+01 2wy4A 140 5.43e+01 1jhgA 101 5.46e+01 1jhgA a.4.12.1 19009 3kwqB 83 5.46e+01 2cb0A 333 5.47e+01 2iazA 113 5.47e+01 a.281.1.2 147593 2vqeM 126 5.50e+01 a.156.1.1 153437 2hueC 84 5.53e+01 a.22.1.1 136776 2r9iA 141 5.59e+01 2ozbB 260 5.64e+01 a.183.1.1 145742 2oieA 111 5.68e+01 a.204.1.2 139092 3adoA 319 5.70e+01 3be6A 297 5.76e+01 3kjdA 368 5.86e+01 2o7iA 592 5.87e+01 1kx5B 102 5.87e+01 a.22.1.1 77594 1elwA 118 5.89e+01 1a17 a.118.8.1 19207 1tazA 365 5.91e+01 a.211.1.2 106734 1tzyD 103 5.92e+01 a.22.1.1 107533 1wixA 164 5.92e+01 a.40.3.1 114683 2r9zA 463 5.96e+01 1cpcA 162 5.98e+01 1cpcA a.1.1.3 15643 2gtsA 86 6.00e+01 a.25.5.1 147176 2qqyA 149 6.03e+01 3ilcA 197 6.05e+01 2iufA 688 6.09e+01 1ihgA 370 6.14e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 3dyjA 332 6.16e+01 3ivyA 433 6.20e+01 1nekA 588 6.21e+01 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 3kj0A 158 6.21e+01 1wleA 501 6.21e+01 1otvA 259 6.27e+01 a.132.1.4 93526 3lxzA 229 6.33e+01 3f1iH 98 6.34e+01 1r2fA 319 6.38e+01 1r2fA a.25.1.2 16800 3h5dA 311 6.40e+01 3mliA 100 6.42e+01 2g1pA 278 6.46e+01 1z0kB 69 6.46e+01 a.2.19.1 124322 3hx0A 335 6.47e+01 1t5oA 351 6.60e+01 c.124.1.5 106459 3ixfA 137 6.61e+01 2ax9A 256 6.63e+01 a.123.1.1 127481 1w9cA 321 6.63e+01 a.118.1.19 114410 3cjhB 64 6.64e+01 2dc0A 434 6.66e+01 2ax8A 256 6.68e+01 3l09A 266 6.73e+01 2yxhA 116 6.74e+01 1fjgT 106 6.77e+01 1fjfT a.7.6.1 16338 2uubT 106 6.85e+01 a.7.6.1 139951 3dr9A 137 6.92e+01 2gkpA 167 6.99e+01 d.351.1.1 147129 1wzuA 300 7.06e+01 c.145.1.1 121528 3g89A 249 7.08e+01 3h0lC 94 7.19e+01 1e85A 127 7.20e+01 1bbhA a.24.3.2 16549 3cveA 72 7.25e+01 2qeuA 141 7.44e+01 1w0bA 102 7.46e+01 a.7.11.1 108985 1ng6A 148 7.48e+01 a.182.1.1 85670 2cchB 260 7.49e+01 a.74.1.1,a.74.1.1 130237,130238 1ahxA 396 7.51e+01 1ajsA c.67.1.1 34293 1z2cB 383 7.51e+01 a.118.1.23 124377 1jb0A 755 7.53e+01 1jb0A f.29.1.1 62820 1nkpA 88 7.53e+01 a.38.1.1 80573 1tbfA 347 7.64e+01 a.211.1.2 106743 3f2bA 1041 7.68e+01 1y74A 57 7.69e+01 a.194.1.1 122679 2novA 496 7.69e+01 2qfnA 138 7.73e+01 3hl2A 501 7.73e+01 2qm1A 326 7.75e+01 2ts1 419 7.77e+01 2ts1 1hs7A 97 7.79e+01 1hs7A a.47.2.1 61236 3a01A 93 7.80e+01 1gesA 450 7.80e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 3kdjB 316 7.83e+01 1yzmA 51 7.83e+01 a.2.19.1 124283 2f31A 233 7.83e+01 3ee4A 323 7.84e+01 2e2aA 105 7.87e+01 a.7.2.1 88499 2qzcA 214 7.90e+01