# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3h3mA 126 8.33e-13 2avkA 136 3.57e-01 3hr0A 263 1.65e+00 2oy9A 98 2.05e+00 a.276.1.1 149063 2ccyA 128 2.13e+00 2ccyA a.24.3.2 16544 1fjgM 126 2.90e+00 1fjfM a.156.1.1 16293 1syyA 346 3.54e+00 a.25.1.2 106126 1qkrA 188 3.77e+00 1qkrA a.24.9.1 16628 1or3A 165 3.93e+00 1nfn a.24.1.1 16522 2fztA 79 4.32e+00 a.46.3.1 134476 2p22D 79 4.82e+00 3l9jC 134 5.18e+00 2jx0A 135 5.30e+00 3lbxB 185 5.60e+00 2r31A 239 6.07e+00 d.381.1.1 151546 3lkeA 263 6.73e+00 2ax8A 256 7.55e+00 2kvpA 165 7.62e+00 3eb2A 300 7.64e+00 1ux8A 132 7.77e+00 a.1.1.1 113449 2f2aC 100 8.10e+00 a.137.12.1 132804 2rd3A 223 8.88e+00 2ax9A 256 8.88e+00 a.123.1.1 127481 2qkwA 164 9.06e+00 a.8.8.1 150848 2chpA 153 9.20e+00 1nt2B 258 9.44e+00 a.183.1.1 86150 3bc1B 59 9.65e+00 2vqeM 126 1.00e+01 a.156.1.1 153437 1w33A 181 1.01e+01 3ibxA 221 1.01e+01 2v6xA 85 1.01e+01 2fkzA 155 1.02e+01 a.25.1.1 133688 3a1gB 40 1.05e+01 3ip4C 100 1.07e+01 1iweA 457 1.14e+01 c.37.1.10 71486 1jkvA 266 1.15e+01 a.25.1.3 71719 1he1A 135 1.15e+01 1he1A a.24.11.1 16641 1o9iA 266 1.15e+01 a.25.1.3 92671 1woqA 267 1.16e+01 c.55.1.10,c.55.1.10 109462,109463 1y8oA 419 1.17e+01 a.29.5.1,d.122.1.4 144603,144604 2vdeA 460 1.17e+01 1pd3A 58 1.22e+01 a.30.3.1 94512 3e2cA 158 1.31e+01 1tzvA 142 1.31e+01 a.79.1.1 107526 3ez0A 225 1.34e+01 1t7rA 269 1.34e+01 a.123.1.1 106635 3cjhB 64 1.34e+01 2rpaA 78 1.47e+01 1r0dA 206 1.51e+01 a.216.1.1 104715 1nkpA 88 1.55e+01 a.38.1.1 80573 2ax6A 256 1.57e+01 a.123.1.1 127479 1mu5A 471 1.58e+01 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 3cx5F 146 1.61e+01 f.28.1.1 157086 1gw5A 621 1.61e+01 a.118.1.10 70629 2rfpA 171 1.62e+01 1wdzA 242 1.67e+01 a.238.1.3 120928 3mquA 171 1.67e+01 3hinA 275 1.72e+01 1ek9A 428 1.79e+01 1ek9A f.5.1.1 43809 2vglA 621 1.81e+01 3mq1A 103 1.81e+01 2pocA 367 1.81e+01 2novA 496 1.91e+01 2hkjA 469 1.92e+01 a.156.1.3,d.14.1.3,d.122.1.2 136553,136554,136555 2qqyA 149 1.95e+01 1b5tA 275 1.97e+01 1b5tA c.1.23.1 29676 1fe6C 52 2.01e+01 1fe6C h.1.19.1 45664 2ehwA 120 2.06e+01 1e85A 127 2.09e+01 1bbhA a.24.3.2 16549 3i0yA 140 2.10e+01 1r4gA 53 2.16e+01 a.8.5.1 96996 2qaiA 111 2.17e+01 2pjwV 91 2.18e+01 1fcyA 236 2.20e+01 2lbd a.123.1.1 19282 3kwsA 287 2.24e+01 2opiA 212 2.27e+01 3k29A 169 2.29e+01 1ywmA 200 2.31e+01 1ykhB 132 2.34e+01 a.252.1.1 123519 2q4xA 221 2.36e+01 a.132.1.3 139880 2gf4A 100 2.37e+01 a.8.10.1 135074 1mx0A 472 2.41e+01 a.156.1.3,d.14.1.3,d.122.1.2 79618,79619,79620 1kfrA 147 2.44e+01 a.1.1.2 72424 1tn3A 137 2.51e+01 d.169.1.1 42423 1ez3A 127 2.57e+01 1dn1B a.47.2.1 17768 1bcfA 158 2.60e+01 1bcfA a.25.1.1 16648 2rdcA 153 2.66e+01 2vzbA 170 2.69e+01 1fe6A 52 2.70e+01 1fe6A h.1.19.1 45662 2nsaA 170 2.73e+01 1ohfA 644 2.74e+01 b.121.4.8 93014 2f2gA 221 2.77e+01 a.132.1.3 132816 1cqmA 101 2.82e+01 1ris d.58.14.1 39321 1mw9X 592 2.89e+01 e.10.1.1 91480 3e1qA 158 2.94e+01 1owfA 99 3.03e+01 a.55.1.1 87487 2wtlA 173 3.06e+01 3cl3D 130 3.09e+01 1ybkA 52 3.13e+01 1vctA 205 3.16e+01 a.7.12.1,d.286.1.1 119986,119987 2vxiA 158 3.21e+01 1xg2B 153 3.26e+01 3evyA 239 3.27e+01 2ovyA 362 3.38e+01 1h6gA 256 3.38e+01 1h6gA a.24.9.1,a.24.9.1 60669,60670 1fjgT 106 3.44e+01 1fjfT a.7.6.1 16338 2zo4A 317 3.48e+01 2btzA 394 3.54e+01 2faoA 309 3.55e+01 2p65A 187 3.56e+01 2gscA 128 3.59e+01 a.29.16.1 147169 2ipcA 997 3.59e+01 1ug7A 128 3.61e+01 a.24.24.1 107824 1b68A 191 3.61e+01 1nfn a.24.1.1 59076 2ux0A 143 3.62e+01 d.17.4.7 152231 1mxsA 225 3.65e+01 c.1.10.1 91494 2p54A 267 3.68e+01 a.123.1.1 139497 2i76A 276 3.75e+01 a.100.1.10,c.2.1.6 147535,147536 3e6iA 476 3.83e+01 1lnwA 147 3.89e+01 a.4.5.28 78104 3gohA 315 3.99e+01 1gkzA 388 4.05e+01 a.29.5.1,d.122.1.4 65268,65269 2hueC 84 4.07e+01 a.22.1.1 136776 2pihA 151 4.08e+01 a.281.1.1 149511 1bgcA 174 4.08e+01 a.26.1.1 16822 2vj4A 294 4.15e+01 3hh0A 146 4.17e+01 3crkA 407 4.17e+01 2jg0A 535 4.24e+01 a.102.1.9 148034 1ihbA 162 4.27e+01 1bd8 d.211.1.1 19161 3lxzA 229 4.27e+01 1dtdA 303 4.32e+01 1aye c.56.5.1 33823 3khaA 95 4.33e+01 1allA 160 4.35e+01 1qgwC a.1.1.3 15647 2g7rA 117 4.41e+01 2rslA 140 4.41e+01 2rslA c.53.1.1 33345 1bgc 174 4.48e+01 1bgc 2ox6A 166 4.51e+01 a.35.1.6 149053 3fhfA 214 4.60e+01 1vhcA 224 4.78e+01 c.1.10.1 100661 1q67A 231 4.79e+01 b.55.1.7 95960 1vgjA 184 4.86e+01 1n8vA 112 4.88e+01 a.118.21.1 85457 3lwtX 505 4.88e+01 3kwqB 83 4.91e+01 2pd6A 264 4.92e+01 1eyhA 144 4.93e+01 1eduA a.118.9.1 19214 3bg1B 442 4.97e+01 1ppjA 446 5.01e+01 d.185.1.1,d.185.1.1 104252,104253 1kx5B 102 5.02e+01 a.22.1.1 77594 2gkpA 167 5.06e+01 d.351.1.1 147129 2i62A 265 5.07e+01 1zoqC 47 5.10e+01 a.153.1.1 125453 1dowA 205 5.10e+01 1dovA a.24.9.1 16626 1zeeA 403 5.18e+01 a.266.1.2 124981 1h97A 147 5.19e+01 1h97A a.1.1.2 60812 1gesA 450 5.21e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 2ousA 331 5.24e+01 2pw6A 271 5.28e+01 c.56.6.1 149895 3mdkA 217 5.33e+01 3f9pC 467 5.39e+01 1m5iA 125 5.40e+01 h.4.13.1 78648 2qrwA 128 5.41e+01 2idlA 117 5.46e+01 d.64.2.1 147638 2hytA 197 5.46e+01 1xsvA 113 5.49e+01 a.4.13.3 116003 3lypA 215 5.54e+01 2clbA 188 5.55e+01 3f6nA 129 5.56e+01 3iveA 509 5.59e+01 4blmA 265 5.65e+01 1btl e.3.1.1 42721 2fqmA 75 5.65e+01 d.378.1.1 147042 2za8A 167 5.67e+01 a.25.1.1 154276 2p6vA 114 5.70e+01 a.277.1.1 149278 3hp4A 185 5.70e+01 3g68A 352 5.73e+01 3c1mA 473 5.77e+01 2azeB 106 5.80e+01 e.63.1.2 127606 1kb9F 74 5.87e+01 f.28.1.1 77321 2r9zA 463 5.96e+01 2crbA 97 5.96e+01 a.7.16.1 130737 2uubT 106 5.98e+01 a.7.6.1 139951 3kj0A 158 6.04e+01 1d2vC 466 6.11e+01 1mhlC 2weyA 343 6.16e+01 2nwbA 400 6.21e+01 2o0i1 180 6.22e+01 3kphA 217 6.26e+01 3movA 95 6.36e+01 1ud0A 113 6.38e+01 a.8.4.1 99198 2z0qA 346 6.42e+01 3echA 142 6.47e+01 1tzyD 103 6.50e+01 a.22.1.1 107533 1uw0A 117 6.67e+01 g.39.1.12 108063 3hhoA 174 6.70e+01 1h6qA 168 6.73e+01 1h6qA b.88.1.2 60692 1b9xC 246 6.74e+01 1b9yC c.47.1.6 33053 2h8oA 335 6.82e+01 2vqeT 106 6.82e+01 a.7.6.1 153444 3li9A 291 6.88e+01 3g85A 289 6.88e+01 3m5wA 322 6.90e+01 1z1bA 356 6.93e+01 d.10.1.4,d.163.1.1 124346,124347 1zd1A 284 6.95e+01 2f6sA 201 6.96e+01 a.265.1.1 133058 2x19B 963 6.96e+01 2vxxA 192 6.97e+01 1m0uA 249 7.01e+01 a.45.1.1,c.47.1.5 78359,78360 3kzqA 208 7.05e+01 2v2pA 174 7.09e+01 2r91A 286 7.12e+01 3icxA 255 7.20e+01 1cpq 129 7.25e+01 1cpq 1cpqA 129 7.28e+01 a.24.3.2 16556 3doeB 165 7.28e+01 2q8uA 336 7.30e+01 2fm9A 215 7.31e+01 a.257.1.1 133770 3favA 101 7.40e+01 1l8dA 112 7.52e+01 h.4.12.1 73687 1vmbA 140 7.55e+01 d.58.14.1 113672 2h0uA 217 7.57e+01 1ngkA 128 7.69e+01 a.1.1.1 85673 1m12A 84 7.74e+01 a.64.1.1 84745 1z8uA 102 7.78e+01 a.7.11.1 124724 2uuqA 414 7.89e+01 2qolA 376 7.90e+01 1slqA 278 7.91e+01 f.47.1.1 105719 3id5A 388 7.97e+01 3fydA 263 7.97e+01 3hidA 432 8.00e+01