# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3h3mA 126 3.27e-11 2jg0A 535 2.78e-02 a.102.1.9 148034 2jx0A 135 1.37e+00 2of3A 266 1.92e+00 1su0B 159 1.98e+00 d.224.1.2 106015 1nu7D 282 3.86e+00 a.8.6.1,a.8.6.1 92191,92192 2cy8A 453 4.25e+00 2crbA 97 4.41e+00 a.7.16.1 130737 1ufaA 520 4.64e+00 a.8.3.3,c.6.2.4 99329,99330 1eyhA 144 4.72e+00 1eduA a.118.9.1 19214 2a1dD 329 5.40e+00 3bc1B 59 6.15e+00 1pd3A 58 6.24e+00 a.30.3.1 94512 2rd3A 223 7.76e+00 3eb2A 300 8.29e+00 3cp5A 124 8.34e+00 3ibxA 221 8.79e+00 2i76A 276 9.18e+00 a.100.1.10,c.2.1.6 147535,147536 2q4pA 170 9.89e+00 a.204.1.2 150041 1b0b 142 9.91e+00 2fal 1b0bA 142 9.91e+00 a.1.1.2 15010 1bs0A 384 1.04e+01 1bs0A c.67.1.4 34490 2ccyA 128 1.13e+01 2ccyA a.24.3.2 16544 1ug7A 128 1.15e+01 a.24.24.1 107824 2qk2A 242 1.16e+01 3fvcA 663 1.24e+01 1fjgM 126 1.28e+01 1fjfM a.156.1.1 16293 1dmgA 225 1.52e+01 1dmgA c.22.1.1 31036 1wleA 501 1.53e+01 3hjeA 704 1.85e+01 2avkA 136 1.89e+01 1ek9A 428 1.92e+01 1ek9A f.5.1.1 43809 2novA 496 1.94e+01 2ajfA 597 2.04e+01 d.92.1.5 126882 2qcxA 263 2.10e+01 2uubT 106 2.19e+01 a.7.6.1 139951 2oy9A 98 2.27e+01 a.276.1.1 149063 2bcqA 335 2.31e+01 a.60.6.1,a.60.12.1,d.218.1.2 128304,128305,128306 2z8aA 146 2.38e+01 2ax6A 256 2.45e+01 a.123.1.1 127479 2f6hX 419 2.46e+01 2c1nA 258 2.46e+01 a.118.7.1 129640 1rztA 331 2.54e+01 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 1xgwA 176 2.54e+01 3mghA 329 2.58e+01 2gf4A 100 2.59e+01 a.8.10.1 135074 1ppjA 446 2.62e+01 d.185.1.1,d.185.1.1 104252,104253 2pqxA 245 2.64e+01 2ax8A 256 2.75e+01 1w9cA 321 2.79e+01 a.118.1.19 114410 2k37A 59 2.81e+01 1b3uA 588 2.83e+01 1b3uA a.118.1.2 19135 1z8uA 102 2.90e+01 a.7.11.1 124724 3lbxB 185 2.91e+01 2jv7A 78 2.94e+01 1mx0A 472 2.94e+01 a.156.1.3,d.14.1.3,d.122.1.2 79618,79619,79620 2ux0A 143 2.99e+01 d.17.4.7 152231 1epwA 1290 3.01e+01 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1fjgT 106 3.06e+01 1fjfT a.7.6.1 16338 1mu5A 471 3.11e+01 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 1woqA 267 3.12e+01 c.55.1.10,c.55.1.10 109462,109463 2g7lA 243 3.17e+01 a.4.1.9,a.121.1.1 134734,134735 2hkjA 469 3.18e+01 a.156.1.3,d.14.1.3,d.122.1.2 136553,136554,136555 1sg6A 393 3.19e+01 e.22.1.1 105522 3ip4C 100 3.21e+01 2gkpA 167 3.22e+01 d.351.1.1 147129 2nl9A 157 3.22e+01 1g7dA 106 3.22e+01 1g7dA a.71.1.1 18318 2ax9A 256 3.23e+01 a.123.1.1 127481 1tu7A 208 3.27e+01 a.45.1.1,c.47.1.5 112653,112654 2peqA 134 3.29e+01 a.280.1.1 149443 2qqyA 149 3.45e+01 2h88C 140 3.45e+01 1eerA 166 3.50e+01 1eerA a.26.1.2 16846 2dq6A 870 3.60e+01 1jnrA 643 3.61e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 3dghA 483 3.63e+01 1cd3B 120 3.65e+01 1cd3B 1fcyA 236 3.73e+01 2lbd a.123.1.1 19282 3sdhA 146 3.73e+01 3sdhA a.1.1.2 14984 3stdA 165 3.74e+01 3stdA d.17.4.1 38073 1idpA 172 3.76e+01 d.17.4.1 83685 1n1jB 97 3.80e+01 a.22.1.3 79814 1std 172 3.84e+01 3stdA 2cb1A 412 3.95e+01 1vctA 205 3.96e+01 a.7.12.1,d.286.1.1 119986,119987 1miwA 404 4.07e+01 a.173.1.1,d.218.1.4 79162,79163 1d6mA 653 4.09e+01 1d6mA e.10.1.1 43248 2fbwC 141 4.09e+01 2vqeT 106 4.12e+01 a.7.6.1 153444 2o7iA 592 4.18e+01 2hytA 197 4.21e+01 2vqeM 126 4.23e+01 a.156.1.1 153437 1a0rP 245 4.25e+01 1b9yC c.47.1.6 33054 1nkpA 88 4.32e+01 a.38.1.1 80573 1rkpA 326 4.32e+01 a.211.1.2 97620 2dpmA 284 4.33e+01 2dpmA c.66.1.28 34246 1vliA 385 4.37e+01 b.85.1.1,c.1.10.6 108830,108831 1go3F 107 4.41e+01 a.60.8.2 65407 3lkeA 263 4.45e+01 1t0qB 330 4.48e+01 a.25.1.2 106221 1n8vA 112 4.50e+01 a.118.21.1 85457 3ltoA 323 4.51e+01 1w27A 714 4.53e+01 a.127.1.2 114096 3b34A 891 4.54e+01 1tbfA 347 4.63e+01 a.211.1.2 106743 1r42A 615 4.71e+01 d.92.1.5 96968 1tyhA 248 4.74e+01 a.132.1.3 107458 3hc8A 324 4.77e+01 1zroA 602 4.78e+01 a.264.1.1,a.264.1.1 125551,125552 3cjhB 64 4.78e+01 1b5tA 275 4.84e+01 1b5tA c.1.23.1 29676 2gtsA 86 4.85e+01 a.25.5.1 147176 1vf6A 83 4.88e+01 a.194.1.1 100600 1qjbA 245 4.88e+01 1qjaA a.118.7.1 19202 3hx0A 335 4.91e+01 1jocA 125 4.97e+01 g.50.1.1,h.1.21.1 66990,66991 2vccA 891 4.99e+01 3d19A 283 5.00e+01 a.29.13.1,a.29.13.1 157176,157177 3dplC 382 5.06e+01 2g1pA 278 5.08e+01 3cveA 72 5.13e+01 1zt2B 212 5.15e+01 a.262.1.1 125625 2fjbA 643 5.18e+01 1iweA 457 5.20e+01 c.37.1.10 71486 1b9xC 246 5.30e+01 1b9yC c.47.1.6 33053 2gscA 128 5.31e+01 a.29.16.1 147169 3bomA 142 5.34e+01 3h5dA 311 5.37e+01 2gs8A 317 5.42e+01 2bneA 241 5.51e+01 c.73.1.3 128824 3a1gB 40 5.69e+01 2mhr 118 5.85e+01 2mhr 2mhrA 118 5.85e+01 a.24.4.1 16581 2v6xA 85 5.86e+01 2r9iA 141 5.88e+01 3fn2A 106 5.89e+01 3ee4A 323 5.94e+01 2qg7A 458 6.05e+01 3a03A 56 6.06e+01 2gwdA 449 6.08e+01 1v4vA 376 6.10e+01 c.87.1.3 100313 1o9iA 266 6.15e+01 a.25.1.3 92671 2ie4A 589 6.17e+01 a.118.1.2 137291 1t7rA 269 6.17e+01 a.123.1.1 106635 3l09A 266 6.20e+01 1maz 221 6.22e+01 1maz 3echC 25 6.27e+01 2incA 491 6.27e+01 a.25.1.2 137524 1otvA 259 6.28e+01 a.132.1.4 93526 1ud0A 113 6.32e+01 a.8.4.1 99198 2df8A 325 6.40e+01 2e5fA 325 6.42e+01 2i7uA 62 6.43e+01 2cw8A 537 6.50e+01 1tazA 365 6.51e+01 a.211.1.2 106734 3d3bA 141 6.61e+01 2jabA 136 6.64e+01 2d4xA 248 6.66e+01 1jkvA 266 6.81e+01 a.25.1.3 71719 1i7dA 659 6.86e+01 1d6mA e.10.1.1 61886 2incB 322 6.87e+01 a.25.1.2 137525 2oieA 111 6.93e+01 a.204.1.2 139092 2vj4A 294 6.94e+01 2bkkA 264 7.00e+01 2o5cA 659 7.02e+01 3f1iH 98 7.03e+01 4blmA 265 7.03e+01 1btl e.3.1.1 42721 1sqsA 242 7.07e+01 c.23.5.5 98968 3kwsA 287 7.10e+01 1yioA 208 7.14e+01 a.4.6.2,c.23.1.1 123326,123327 3g46A 146 7.17e+01 2qkwA 164 7.18e+01 a.8.8.1 150848 2ou3A 161 7.20e+01 a.287.1.1 149018 3kczA 368 7.24e+01 1wixA 164 7.25e+01 a.40.3.1 114683 1hm6A 346 7.27e+01 1avc a.65.1.1 18147 1jliA 112 7.29e+01 a.26.1.2 16884 3kjdA 368 7.32e+01 2f31A 233 7.32e+01 1t5oA 351 7.33e+01 c.124.1.5 106459 2vhbA 146 7.33e+01 2vhbA a.1.1.2 15629 1bgf 124 7.37e+01 1bgf 1bgfA 124 7.37e+01 a.90.1.1 18537 2r9zA 463 7.42e+01 2qzcA 214 7.44e+01 1kpsB 171 7.60e+01 a.118.12.1 68787 2ehwA 120 7.69e+01 2f2aC 100 7.70e+01 a.137.12.1 132804 2cb0A 333 7.80e+01 2be3A 226 7.95e+01 d.218.1.8 128349