# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3h3mA 126 3.82e-11 2jg0A 535 9.60e-03 a.102.1.9 148034 2jx0A 135 2.73e-01 2crbA 97 7.96e-01 a.7.16.1 130737 3eb2A 300 2.37e+00 2q4pA 170 3.08e+00 a.204.1.2 150041 2cy8A 453 3.44e+00 2qk2A 242 3.60e+00 2a1dD 329 3.63e+00 2of3A 266 3.97e+00 2uubT 106 4.44e+00 a.7.6.1 139951 2qcxA 263 5.28e+00 2avkA 136 5.58e+00 2rd3A 223 6.12e+00 3cp5A 124 6.32e+00 1nu7D 282 6.88e+00 a.8.6.1,a.8.6.1 92191,92192 1pd3A 58 6.91e+00 a.30.3.1 94512 3kj0A 158 7.32e+00 1rztA 331 7.52e+00 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 1bs0A 384 8.07e+00 1bs0A c.67.1.4 34490 3hjeA 704 8.17e+00 1tyhA 248 8.27e+00 a.132.1.3 107458 2i76A 276 8.70e+00 a.100.1.10,c.2.1.6 147535,147536 1ufaA 520 9.11e+00 a.8.3.3,c.6.2.4 99329,99330 2f6hX 419 9.17e+00 2ccyA 128 9.21e+00 2ccyA a.24.3.2 16544 2vj4A 294 9.53e+00 2d5bA 500 9.61e+00 a.27.1.1,c.26.1.1 131268,131269 1a8h 500 9.71e+00 1a8h 3ltoA 323 1.00e+01 2gscA 128 1.00e+01 a.29.16.1 147169 3bc1B 59 1.01e+01 3mghA 329 1.04e+01 1zroA 602 1.10e+01 a.264.1.1,a.264.1.1 125551,125552 2bcqA 335 1.11e+01 a.60.6.1,a.60.12.1,d.218.1.2 128304,128305,128306 2dobA 83 1.11e+01 2gkpA 167 1.12e+01 d.351.1.1 147129 2gs8A 317 1.12e+01 1ug7A 128 1.19e+01 a.24.24.1 107824 2vqeT 106 1.24e+01 a.7.6.1 153444 1zt2B 212 1.27e+01 a.262.1.1 125625 1eyhA 144 1.27e+01 1eduA a.118.9.1 19214 1fjgT 106 1.30e+01 1fjfT a.7.6.1 16338 1jnrA 643 1.32e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 3hx0A 335 1.34e+01 2pqxA 245 1.35e+01 3fvcA 663 1.37e+01 3ip4C 100 1.43e+01 1syyA 346 1.46e+01 a.25.1.2 106126 2c1nA 258 1.49e+01 a.118.7.1 129640 3h5dA 311 1.54e+01 3lkeA 263 1.56e+01 1dmgA 225 1.61e+01 1dmgA c.22.1.1 31036 2nppB 449 1.61e+01 a.118.1.20 138445 2ux0A 143 1.66e+01 d.17.4.7 152231 1qjbA 245 1.66e+01 1qjaA a.118.7.1 19202 2fjbA 643 1.71e+01 1w33A 181 1.82e+01 1yakA 263 1.82e+01 a.132.1.3 122833 2gf4A 100 1.85e+01 a.8.10.1 135074 1z8uA 102 1.88e+01 a.7.11.1 124724 1idpA 172 1.95e+01 d.17.4.1 83685 1b5tA 275 1.95e+01 1b5tA c.1.23.1 29676 1ihgA 370 1.95e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 3lbxB 185 1.97e+01 2incA 491 1.98e+01 a.25.1.2 137524 3stdA 165 1.98e+01 3stdA d.17.4.1 38073 1std 172 1.99e+01 3stdA 3fwkA 308 2.06e+01 1fcyA 236 2.07e+01 2lbd a.123.1.1 19282 3dghA 483 2.08e+01 1r5eA 115 2.09e+01 a.8.8.1 111701 1vctA 205 2.14e+01 a.7.12.1,d.286.1.1 119986,119987 1ppjA 446 2.15e+01 d.185.1.1,d.185.1.1 104252,104253 1b3bA 415 2.17e+01 1hwyA c.2.1.7,c.58.1.1 30244,33892 2v6xA 85 2.21e+01 3dplC 382 2.22e+01 1o9iA 266 2.36e+01 a.25.1.3 92671 1xkyA 301 2.40e+01 c.1.10.1 122094 1wleA 501 2.45e+01 1nkpA 88 2.49e+01 a.38.1.1 80573 2yxhA 116 2.50e+01 1mx0A 472 2.53e+01 a.156.1.3,d.14.1.3,d.122.1.2 79618,79619,79620 2qqyA 149 2.56e+01 3ibxA 221 2.59e+01 1ud0A 113 2.60e+01 a.8.4.1 99198 1jkvA 266 2.62e+01 a.25.1.3 71719 1eerA 166 2.63e+01 1eerA a.26.1.2 16846 2g7lA 243 2.65e+01 a.4.1.9,a.121.1.1 134734,134735 1t0qA 498 2.66e+01 a.25.1.2 106220 1mu5A 471 2.71e+01 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 2hkjA 469 2.74e+01 a.156.1.3,d.14.1.3,d.122.1.2 136553,136554,136555 1otvA 259 2.74e+01 a.132.1.4 93526 2h88C 140 2.74e+01 1n1jB 97 2.78e+01 a.22.1.3 79814 1sqsA 242 2.84e+01 c.23.5.5 98968 2r9iA 141 2.84e+01 2vqeM 126 2.89e+01 a.156.1.1 153437 2oy9A 98 2.92e+01 a.276.1.1 149063 1dhpA 292 2.95e+01 1dhpA c.1.10.1 29097 3iuzA 340 2.96e+01 1epwA 1290 2.98e+01 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1zk8A 183 2.98e+01 a.4.1.9,a.121.1.1 125177,125178 1xgwA 176 3.03e+01 3hr0A 263 3.03e+01 1rrmA 386 3.06e+01 e.22.1.2 105081 2gtsA 86 3.11e+01 a.25.5.1 147176 2odvA 235 3.12e+01 2e2aA 105 3.16e+01 a.7.2.1 88499 1x1nA 524 3.16e+01 c.1.8.1 121593 1jb0A 755 3.19e+01 1jb0A f.29.1.1 62820 3f1iH 98 3.19e+01 2k37A 59 3.21e+01 1ek9A 428 3.23e+01 1ek9A f.5.1.1 43809 1fjgM 126 3.26e+01 1fjfM a.156.1.1 16293 2f2aC 100 3.26e+01 a.137.12.1 132804 2fbwC 141 3.28e+01 3a1gB 40 3.31e+01 2a6lA 292 3.32e+01 c.1.10.1 126285 2a6nA 292 3.33e+01 c.1.10.1 126289 2purA 292 3.34e+01 2nl9A 157 3.35e+01 2atsA 292 3.36e+01 c.1.10.1 127306 2ajfA 597 3.37e+01 d.92.1.5 126882 3h0lC 94 3.45e+01 2ozbB 260 3.46e+01 a.183.1.1 145742 2o7iA 592 3.49e+01 1sg6A 393 3.50e+01 e.22.1.1 105522 1e2aA 105 3.52e+01 1e2aA a.7.2.1 16322 3hhcA 196 3.52e+01 1n8vA 112 3.60e+01 a.118.21.1 85457 1sxjC 340 3.60e+01 a.80.1.1,c.37.1.20 106085,106086 2d7dB 40 3.64e+01 3dbaA 180 3.65e+01 1hkxA 147 3.69e+01 d.17.4.7 83567 2novA 496 3.73e+01 2jabA 136 3.73e+01 3kczA 368 3.75e+01 1z0kB 69 3.77e+01 a.2.19.1 124322 2cjeA 268 3.78e+01 2boyA 254 3.79e+01 1woqA 267 3.83e+01 c.55.1.10,c.55.1.10 109462,109463 3ee4A 323 3.90e+01 3kjdA 368 4.02e+01 3cjhB 64 4.05e+01 1esmA 316 4.08e+01 1esmA c.37.1.6 31953 1b26A 416 4.13e+01 1hwyA c.2.1.7,c.58.1.1 30232,33880 1r2fA 319 4.18e+01 1r2fA a.25.1.2 16800 1yzmA 51 4.19e+01 a.2.19.1 124283 2qm1A 326 4.21e+01 3fgaB 403 4.22e+01 2ojpA 292 4.26e+01 1r42A 615 4.27e+01 d.92.1.5 96968 3icxA 255 4.27e+01 3fn2A 106 4.27e+01 1tazA 365 4.30e+01 a.211.1.2 106734 2df8A 325 4.38e+01 3hc8A 324 4.38e+01 3jrqA 326 4.39e+01 2q83A 346 4.39e+01 1yioA 208 4.39e+01 a.4.6.2,c.23.1.1 123326,123327 1orsC 132 4.40e+01 f.14.1.1 87353 2e5fA 325 4.42e+01 1xpcA 248 4.52e+01 a.123.1.1 115738 2ovyA 362 4.53e+01 3kwsA 287 4.56e+01 1iv8A 720 4.58e+01 b.71.1.1,c.1.8.1 76842,76843 1tbfA 347 4.60e+01 a.211.1.2 106743 3cveA 72 4.64e+01 1gvfA 286 4.67e+01 c.1.10.2 70599 2je6A 277 4.72e+01 d.14.1.4,d.101.1.1 147991,147992 2cj4A 150 4.78e+01 a.29.6.1 130518 2bneA 241 4.79e+01 c.73.1.3 128824 1miwA 404 4.79e+01 a.173.1.1,d.218.1.4 79162,79163 2cb0A 333 4.85e+01 1itwA 741 4.85e+01 c.77.1.2 76793 1moq 368 4.86e+01 1moq 1moqA 368 4.86e+01 c.80.1.1 35302 1i1rB 181 4.91e+01 1i1rB a.26.1.1 61548 2r9zA 463 4.91e+01 2f31A 233 4.92e+01 2peqA 134 4.93e+01 a.280.1.1 149443 3echC 25 4.98e+01 2be3A 226 5.04e+01 d.218.1.8 128349 2dpmA 284 5.13e+01 2dpmA c.66.1.28 34246 1wr6A 111 5.14e+01 a.7.8.1 144561 1e85A 127 5.24e+01 1bbhA a.24.3.2 16549 2ousA 331 5.25e+01 2qzcA 214 5.27e+01 2g9wA 138 5.32e+01 a.4.5.39 147097 3lxzA 229 5.32e+01 1siqA 392 5.36e+01 a.29.3.1,e.6.1.1 105585,105586 1ng6A 148 5.49e+01 a.182.1.1 85670 1xg2B 153 5.56e+01 1wzuA 300 5.57e+01 c.145.1.1 121528 1jocA 125 5.65e+01 g.50.1.1,h.1.21.1 66990,66991 1jliA 112 5.67e+01 a.26.1.2 16884 1tu7A 208 5.71e+01 a.45.1.1,c.47.1.5 112653,112654 3adoA 319 5.73e+01 1b3uA 588 5.78e+01 1b3uA a.118.1.2 19135 3a03A 56 5.79e+01 3l1nA 194 5.82e+01 2dpoA 319 5.88e+01 2w2dB 431 5.93e+01 2weyA 343 5.94e+01 1vcvA 226 5.96e+01 c.1.10.1 119988 1t7rA 269 5.98e+01 a.123.1.1 106635 2ie4A 589 6.02e+01 a.118.1.2 137291 2fztA 79 6.04e+01 a.46.3.1 134476 2cw8A 537 6.07e+01 2qfnA 138 6.22e+01 3kdjB 316 6.27e+01 1ez3A 127 6.30e+01 1dn1B a.47.2.1 17768 1s9aA 257 6.33e+01 b.3.6.1 105379 3f0nA 414 6.44e+01 1wm5A 208 6.49e+01 a.118.8.1 121028 3dhzA 329 6.55e+01 a.25.1.2 157741 1ahxA 396 6.56e+01 1ajsA c.67.1.1 34293 1dqsA 393 6.59e+01 1dqsA e.22.1.1 43347 1fe6C 52 6.62e+01 1fe6C h.1.19.1 45664 3ixfA 137 6.63e+01 3caiA 406 6.65e+01 2hytA 197 6.65e+01 1kgnA 329 6.66e+01 a.25.1.2 68584 1g7dA 106 6.68e+01 1g7dA a.71.1.1 18318 1lw9A 164 6.69e+01 d.2.1.3 84727 3e82A 364 6.72e+01 1f74A 293 6.77e+01 1nal3 c.1.10.1 29079 3lxgA 308 6.84e+01 3dr9A 137 6.90e+01 2bkkA 264 6.92e+01 1ew6A 137 7.04e+01 1ewaA a.1.1.2 15637 1vf6A 83 7.16e+01 a.194.1.1 100600 1qazA 351 7.17e+01 1qazA a.102.3.1 18848 3i0yA 140 7.23e+01 1vhcA 224 7.23e+01 c.1.10.1 100661 3epsA 578 7.23e+01 2pfxA 191 7.24e+01 a.152.1.3 149452 2g1pA 278 7.26e+01 1rkpA 326 7.26e+01 a.211.1.2 97620 1z2cB 383 7.33e+01 a.118.1.23 124377 2qsbA 89 7.34e+01 a.29.14.1 151315 1e52A 63 7.35e+01 1e52A a.2.9.1 59256 3kmpA 124 7.38e+01 1y74A 57 7.43e+01 a.194.1.1 122679 1q4gA 553 7.44e+01 a.93.1.2,g.3.11.1 95789,95790 1w0bA 102 7.45e+01 a.7.11.1 108985 1fjgV 26 7.46e+01 j.9.1.1 46116 1awcB 153 7.52e+01 1bd8 d.211.1.1 19156 2cchB 260 7.64e+01 a.74.1.1,a.74.1.1 130237,130238 1gesA 450 7.67e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 2oqxA 467 7.67e+01 c.67.1.2 148998 3mekA 429 7.67e+01 3f3fC 570 7.68e+01 3m5uA 361 7.68e+01 2v1pA 467 7.71e+01 c.67.1.2 152410 3cqxC 88 7.79e+01 1woyA 500 7.99e+01 a.27.1.1,c.26.1.1 121130,121131 176lA 164 8.00e+01 1l92 d.2.1.3 36942