# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2c4xA 260 8.40e-13 1l0qA 391 7.71e-11 b.1.3.1,b.69.2.3 77644,77645 1b4rA 80 6.91e-10 b.1.3.1 22072 2wg3C 463 0.000299 1wgoA 123 0.008215 b.1.3.1 114618 2yrlA 102 0.02030 2e7mA 113 0.4343 3c12A 138 0.5082 1cwvA 492 0.5705 b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 1hnfA 182 0.6886 b.1.1.1,b.1.1.3 19741,21680 2hqsA 415 0.7319 b.68.4.1,c.51.2.1 136662,136663 1f6fB 210 1.242 b.1.2.1,b.1.2.1 22033,22034 2gbaA 105 1.656 2kpnA 103 1.836 1hnf 182 2.076 1qfhA 212 2.546 b.1.18.10,b.1.18.10 21893,21894 1v05A 96 2.624 b.1.18.10 113465 3cnkA 89 2.671 1gt7A 274 2.777 c.74.1.1 70398 3eifA 936 2.960 1h2wA 710 3.152 b.69.7.1,c.69.1.4 76596,76597 1kdjA 102 3.416 b.6.1.1 22864 3k5rA 218 3.419 1zxqA 192 3.436 b.1.1.3,b.1.1.4 21657,21693 3duhA 314 3.697 b.1.1.4,b.1.2.1,b.1.2.1 157882,157883,157884 1fnf 368 3.954 1f42A 306 4.285 b.1.1.4,b.1.2.1,b.1.2.1 59636,59637,59638 1crzA 403 4.396 b.68.4.1,c.51.2.1 27629,33211 1iamA 185 4.993 b.1.1.3,b.1.1.4 21653,21689 2iepA 192 5.095 1epfA 191 5.628 b.1.1.4,b.1.1.4 21694,21695 1fnhA 271 6.675 b.1.2.1,b.1.2.1,b.1.2.1 21976,21977,21978 1qr4A 186 6.986 b.1.2.1,b.1.2.1 21986,21987 2dmcA 116 7.142 b.1.18.10 131572 3lngA 215 7.210 2p52A 196 7.368 2bklA 695 7.520 2nqcA 138 7.684 b.1.18.10 148344 1ojrA 274 7.985 c.74.1.1 93147 1rhfA 182 8.127 b.1.1.1,b.1.1.4 97469,97470 3lnhA 213 8.502 2d7nA 93 8.960 b.1.18.10 131322 3lneA 213 9.205 2geeA 203 10.49 3lk42 277 11.22 1k32A 1045 11.37 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 3lnfA 213 11.61 3ia8A 163 11.73 1qr4B 186 11.78 b.1.2.1,b.1.2.1 21988,21989 2oz4A 265 12.33 b.1.1.3,b.1.1.4,b.1.1.4 149099,149100,149101 1vpsA 289 12.90 b.121.6.1 23336 3jz7A 214 13.32 3l5iA 290 13.96 2p4oA 306 14.59 b.68.6.3 149216 1b9zA 516 14.70 b.3.1.1,c.1.8.1 22528,28798 1nexB 464 15.65 a.158.1.1,b.69.4.1 80443,80444 1e8nA 710 15.69 b.69.7.1,c.69.1.4 27675,34643 2bi0A 337 15.74 d.38.1.4,d.38.1.4 128565,128566 1pz4A 116 15.77 d.106.1.1 95400 1bquA 215 15.80 b.1.2.1,b.1.2.1 22066,22067 1sva1 361 15.81 2vduB 450 15.87 3lqaC 192 16.53 2gu3A 136 17.08 d.17.1.6,d.17.1.6 147178,147179 3k1uA 330 17.36 1vjuA 309 17.77 d.248.1.1 100835 3frxA 319 18.11 1utcA 363 18.19 a.118.1.4,b.69.6.1 99914,99915 1o6gA 710 18.26 b.69.7.1,c.69.1.4 81087,81088 1a0rB 340 18.44 b.69.4.1 27658 1xafA 246 18.57 d.194.1.2 109535 3bp6B 202 19.63 1itbB 315 20.06 b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 1nglA 179 20.58 b.60.1.1 27146 2jixB 225 20.65 b.1.2.1,b.1.2.1 148107,148108 3l5hA 589 20.98 3bjqA 316 21.95 2fp8A 322 22.21 3iujA 693 22.50 1yifA 533 22.66 b.29.1.23,b.67.2.1 123283,123284 3gleA 295 23.28 1cdcA 99 24.72 b.1.1.1 19746 1h2xA 710 24.96 b.69.7.1,c.69.1.4 76598,76599 3bp5B 202 25.03 1fnlA 175 25.04 b.1.1.4,b.1.1.4 21783,21784 3cu9A 314 25.27 3ei3B 383 25.28 1q55A 880 25.28 i.20.1.1 95862 2o0i1 180 25.52 3iurA 693 25.56 1qg3A 195 25.58 b.1.2.1,b.1.2.1 21993,21994 1cczA 171 25.97 b.1.1.1,b.1.1.3 19758,21683 3lniA 213 26.35 2jhmF 218 26.38 1nr0A 611 26.60 b.69.4.1,b.69.4.1 86078,86079 1erjA 393 26.88 b.69.4.1 27660 1wl7A 312 27.31 b.67.2.1 120996 1qqsA 174 27.62 b.60.1.1 27143 2h41A 95 27.77 2j6gA 266 27.77 3cpnA 330 28.42 2qr5A 582 28.78 b.69.7.2,c.69.1.33 151278,151279 1iuzA 98 28.87 b.6.1.1 22861 2b5iC 199 29.20 b.1.2.1,b.1.2.1 127898,127899 1itcA 516 29.43 b.3.1.1,c.1.8.1 83705,83706 3emhA 318 29.54 2o26U 290 29.86 2wg4B 457 30.12 1nciA 110 30.38 b.1.6.1 22191 2aq5A 402 30.43 2zahA 331 30.50 1rwiA 270 30.98 b.68.9.1 97987 1ecsA 126 31.14 d.32.1.2 59407 3c99A 432 31.15 1gotB 340 31.70 b.69.4.1 27648 1pl3A 186 31.82 b.1.9.1 88158 3i2nA 357 32.31 3k5sA 217 32.64 3hhrB 203 32.72 b.1.2.1,b.1.2.1 22005,22006 2z5wA 136 32.94 2bs6A 90 33.32 1ewjA 126 33.72 d.32.1.2 59526 3f7pC 248 34.11 2bcjB 340 34.55 b.69.4.1 128289 1lkkA 105 34.74 d.93.1.1 40412 2hpwA 233 35.34 1wckA 220 35.48 2rikA 284 35.62 1j83A 180 36.24 b.18.1.12 66430 1tbgA 340 36.47 b.69.4.1 27649 2zqkA 189 37.01 3kstA 306 37.01 2ee9A 95 37.71 2gnqA 336 38.06 2h14A 317 38.10 2x10A 545 38.18 1erxA 184 38.63 b.60.1.1 27164 1ebpA 211 40.52 b.1.2.1,b.1.2.1 22023,22024 2be1A 339 40.63 3knbB 107 40.64 3b2mA 295 40.65 3l6pA 236 40.78 1l6zA 216 41.04 b.1.1.1,b.1.1.4 77770,77771 1y7bA 542 42.28 b.29.1.23,b.67.2.1 122687,122688 1pazA 123 42.33 b.6.1.1 22878 3cfsB 414 42.56 1bh5A 183 42.85 d.32.1.1 38476 2oxgB 124 44.30 1py0A 125 44.63 b.6.1.1 111645 2vukA 219 45.29 2k7pA 188 45.49 2pltA 98 45.56 b.6.1.1 22862 2ovrB 445 46.12 a.158.1.1,b.69.4.1 145735,145736 3g7dA 443 46.31 2k5qA 105 46.51 b.40.13.1 148274 3iiiA 560 46.72 1g0sA 209 47.12 d.113.1.1 60187 2tbvA 387 47.21 b.121.4.7 23302 2rbbA 141 47.59 2ds0A 130 47.67 2wnpF 217 48.31 2v44A 189 48.80 1bxvA 91 49.23 b.6.1.1 22875 3exzA 154 49.45 1opoA 348 49.56 b.121.4.7 87240 1vemA 516 49.80 b.3.1.1,c.1.8.1 120021,120022 2w0pA 94 50.38 b.1.18.10 153738 1aotF 106 50.76 d.93.1.1 40458 1pguA 615 51.19 b.69.4.1,b.69.4.1 88069,88070 3d06A 200 51.29 3e8vA 82 51.73 2brqA 97 52.57 b.1.18.10 129008 3kolA 156 52.94 1id2A 106 53.11 b.6.1.1 62288 3cjxA 165 53.34 2j5zA 221 53.49 2qnkA 286 54.14 1gxrA 337 54.42 b.69.4.1 70722 3mmyA 368 54.95 3f3fA 351 55.30 2co7B 221 56.57 b.1.11.1,b.7.2.1 145049,145050 3blcA 330 56.62 2pbiB 354 56.77 1sy3A 184 56.85 b.60.1.1 106110 1iktA 120 57.17 d.106.1.1 66188 3d85D 306 57.36 b.1.1.4,b.1.2.1,b.1.2.1 157439,157440,157441 2fhzB 108 57.55 d.243.1.2 133506 2pm7B 297 57.70 2wwkO 109 58.06 2pcxA 220 58.08 1ouwA 152 58.55 b.77.3.1 93571 1yr2A 741 58.67 1p22A 435 59.19 a.158.1.1,b.69.4.1 87715,87716 1ag6A 99 59.69 b.6.1.1 22857 3irgB 107 59.81 3ei4B 436 60.20 2wp3O 109 60.65 2k7qA 191 60.71 2hjjA 87 60.98 d.50.3.3 147295 1ic1A 190 61.07 b.1.1.3,b.1.1.4 21654,21690 2w7qA 204 61.48 1xkiA 162 61.95 b.60.1.1 115408 3ihyA 600 62.84 3lb9A 182 62.99 2o28A 184 63.69 2oklA 185 63.78 1cd9B 215 63.83 b.1.2.1,b.1.2.1 22041,22042 1e5uI 187 64.29 b.1.14.1,d.169.1.3 22372,42441 1jxgA 100 64.29 b.6.1.1 67413 3h20A 323 64.61 3hn3A 613 64.79 3di2B 223 64.85 2a74A 643 65.14 3e5zA 296 67.18 1cdyA 178 68.84 b.1.1.1,b.1.1.3 19719,21658 2zivA 311 68.88 1qpxA 218 68.97 b.1.11.1,b.7.2.1 22318,23200 3iglA 200 70.75 2ojhA 297 71.48 3ibsA 218 71.83 3cvbA 105 72.22 3lrvA 343 72.45 3hdjA 313 72.66 2bf6A 449 73.15 1ofzA 312 73.82 b.68.8.1 86978 1vcaA 202 74.45 b.1.1.3,b.1.1.4 21649,21685 1nd6A 354 74.70 c.60.1.2 80407 1cqyA 99 75.05 b.3.1.1 22527 1viuA 203 75.91 d.113.1.1 100771 1e1aA 314 76.03 b.68.6.1 59155 1mzyA 333 76.52 b.6.1.3,b.6.1.3 103848,103849 1u4cA 349 76.81 b.69.4.2 107666 1odhA 174 76.99 d.239.1.1 86850 1qy1A 174 77.49 b.60.1.1 96568 1lcjA 109 78.38 d.93.1.1 40414 1dzkA 157 78.54 b.60.1.1 27096 1f97A 212 78.64 b.1.1.1,b.1.1.4 19763,21764 1n26A 325 78.71 b.1.1.4,b.1.2.1,b.1.2.1 79850,79851,79852 3h3lA 241 79.50 3dxkC 372 80.01 1eggA 147 81.00 d.169.1.1 42333 1bqkA 124 81.05 b.6.1.1 22889 3elsA 158 81.48 2x41A 721 82.04 2ioiA 201 82.30 1q38A 89 82.70 b.1.2.1 95663 1qa9A 102 82.91 b.1.1.1 19742 2w87A 139 83.27 2zfyA 234 83.43 2ghsA 326 84.88 b.68.6.1 135209 2awkA 228 85.16 3k6dA 99 85.26 1egiA 147 85.80 d.169.1.1 42331 1f2qA 176 86.52 b.1.1.4,b.1.1.4 21789,21790 2j21A 219 86.58 1mq8A 291 87.05 b.1.1.3,b.1.1.4 79405,79406 3ivmA 693 87.32 1ul7A 102 87.82 d.129.6.1 99540 2aexA 346 88.49 1d7cA 190 89.42 b.1.9.1 22309 1iznB 277 89.63 e.43.1.2 83848 2d39A 237 89.81