# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2c4xA 260 1.22e-13 1l0qA 391 7.12e-11 b.1.3.1,b.69.2.3 77644,77645 1b4rA 80 3.63e-10 b.1.3.1 22072 2wg3C 463 0.000231 1wgoA 123 0.04447 b.1.3.1 114618 2yrlA 102 0.05836 2e7mA 113 0.4871 3c12A 138 1.244 1hnfA 182 3.071 b.1.1.1,b.1.1.3 19741,21680 1gt7A 274 3.130 c.74.1.1 70398 2hqsA 415 3.314 b.68.4.1,c.51.2.1 136662,136663 3duhA 314 3.524 b.1.1.4,b.1.2.1,b.1.2.1 157882,157883,157884 2kpnA 103 4.460 2iepA 192 5.775 1f6fB 210 6.204 b.1.2.1,b.1.2.1 22033,22034 1crzA 403 6.872 b.68.4.1,c.51.2.1 27629,33211 1f42A 306 7.275 b.1.1.4,b.1.2.1,b.1.2.1 59636,59637,59638 1qr4B 186 7.607 b.1.2.1,b.1.2.1 21988,21989 2gbaA 105 8.034 1qr4A 186 8.292 b.1.2.1,b.1.2.1 21986,21987 3l5iA 290 9.187 1fnf 368 9.97 1fnhA 271 10.65 b.1.2.1,b.1.2.1,b.1.2.1 21976,21977,21978 1cwvA 492 12.16 b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 3c99A 432 13.05 2p4oA 306 14.15 b.68.6.3 149216 2vduB 450 14.34 1kdjA 102 15.09 b.6.1.1 22864 2qr5A 582 15.80 b.69.7.2,c.69.1.33 151278,151279 1hnf 182 16.99 1ojrA 274 17.28 c.74.1.1 93147 2nqcA 138 17.59 b.1.18.10 148344 1utcA 363 17.82 a.118.1.4,b.69.6.1 99914,99915 2bi0A 337 18.53 d.38.1.4,d.38.1.4 128565,128566 3k5rA 218 18.80 1h2wA 710 19.22 b.69.7.1,c.69.1.4 76596,76597 2oitA 434 19.85 3frxA 319 20.01 3k1uA 330 21.02 2oz4A 265 21.27 b.1.1.3,b.1.1.4,b.1.1.4 149099,149100,149101 3lngA 215 21.86 1nexB 464 22.36 a.158.1.1,b.69.4.1 80443,80444 3l6pA 236 22.79 1qfhA 212 24.55 b.1.18.10,b.1.18.10 21893,21894 1vpsA 289 27.59 b.121.6.1 23336 1k32A 1045 28.45 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1iamA 185 28.77 b.1.1.3,b.1.1.4 21653,21689 1fnlA 175 29.09 b.1.1.4,b.1.1.4 21783,21784 1a0rB 340 32.80 b.69.4.1 27658 1j83A 180 33.76 b.18.1.12 66430 1epfA 191 33.77 b.1.1.4,b.1.1.4 21694,21695 2bcjB 340 34.06 b.69.4.1 128289 3eifA 936 34.21 3cfsB 414 34.43 1bquA 215 36.84 b.1.2.1,b.1.2.1 22066,22067 1b9zA 516 37.81 b.3.1.1,c.1.8.1 22528,28798 1vjuA 309 38.49 d.248.1.1 100835 1qqsA 174 39.20 b.60.1.1 27143 3lniA 213 40.29 3lk42 277 40.59 1ebpA 211 41.18 b.1.2.1,b.1.2.1 22023,22024 1wckA 220 41.36 2tbvA 387 41.71 b.121.4.7 23302 1sva1 361 42.54 2geeA 203 43.12 3lnhA 213 43.83 1itcA 516 43.93 b.3.1.1,c.1.8.1 83705,83706 2jixB 225 44.19 b.1.2.1,b.1.2.1 148107,148108 1pz4A 116 44.36 d.106.1.1 95400 1qa9A 102 44.43 b.1.1.1 19742 2v44A 189 44.99 2dmcA 116 45.64 b.1.18.10 131572 3cjjA 219 46.69 3lneA 213 46.94 3cpnA 330 47.00 3i2nA 357 47.49 3greA 437 49.69 3d85D 306 49.69 b.1.1.4,b.1.2.1,b.1.2.1 157439,157440,157441 2j7nA 1022 49.81 2o26U 290 49.96 3hhrB 203 52.15 b.1.2.1,b.1.2.1 22005,22006 2x41A 721 53.33 2z5wA 136 53.85 1eerB 227 55.23 b.1.2.1,b.1.2.1 22011,22012 2h14A 317 55.72 1iktA 120 55.72 d.106.1.1 66188 1ev2E 220 55.92 b.1.1.4,b.1.1.4 21738,21739 3emhA 318 56.81 3lqaC 192 57.26 1ebaA 215 58.52 b.1.2.1,b.1.2.1 22015,22016 1gotB 340 59.76 b.69.4.1 27648 2pkdA 111 60.27 3dxkC 372 60.58 3jz7A 214 61.12 3jrqB 186 61.12 1cczA 171 62.78 b.1.1.1,b.1.1.3 19758,21683 2bs6A 90 64.23 1n26A 325 64.89 b.1.1.4,b.1.2.1,b.1.2.1 79850,79851,79852 3mmyA 368 64.91 3gleA 295 65.16 3hn3A 613 65.98 1dpeA 507 66.83 c.94.1.1 35799 3iytA 1263 69.01 2zahA 331 69.41 2wg4B 457 69.49 2oklA 185 70.59 1opoA 348 70.83 b.121.4.7 87240 2x42A 721 71.17 1lqyA 184 71.79 d.167.1.1 74212 3gfcA 425 71.88 2gnqA 336 72.19 3bp6B 202 72.93 2b5iC 199 75.00 b.1.2.1,b.1.2.1 127898,127899 2gu3A 136 76.74 d.17.1.6,d.17.1.6 147178,147179 2zqkA 189 79.24 1w0nA 131 80.15 b.18.1.28 114069 3f3fA 351 81.08 1d0bA 213 81.57 c.10.2.1 30866 2wiiA 645 81.73 1f00I 282 82.21 b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 3ei3B 383 83.41 1v05A 96 84.63 b.1.18.10 113465 2hpwA 233 85.32 1sq9A 397 86.56 b.69.4.1 105889 2ra6A 166 87.19 2pbiB 354 87.66 2awkA 228 87.69