# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2c4xA 260 3.44e-13 1l0qA 391 1.59e-10 b.1.3.1,b.69.2.3 77644,77645 1b4rA 80 6.06e-10 b.1.3.1 22072 2wg3C 463 0.000568 1wgoA 123 0.05127 b.1.3.1 114618 2yrlA 102 0.07693 2e7mA 113 0.6119 3c12A 138 1.496 1gt7A 274 4.932 c.74.1.1 70398 3duhA 314 5.172 b.1.1.4,b.1.2.1,b.1.2.1 157882,157883,157884 1hnfA 182 5.228 b.1.1.1,b.1.1.3 19741,21680 1f42A 306 6.164 b.1.1.4,b.1.2.1,b.1.2.1 59636,59637,59638 2vduB 450 6.176 2hqsA 415 6.881 b.68.4.1,c.51.2.1 136662,136663 1f6fB 210 7.103 b.1.2.1,b.1.2.1 22033,22034 2gbaA 105 7.896 1utcA 363 9.462 a.118.1.4,b.69.6.1 99914,99915 1crzA 403 12.21 b.68.4.1,c.51.2.1 27629,33211 1kdjA 102 12.64 b.6.1.1 22864 1nexB 464 13.12 a.158.1.1,b.69.4.1 80443,80444 2kpnA 103 13.95 2iepA 192 14.48 1vpsA 289 15.04 b.121.6.1 23336 1hnf 182 17.32 1qr4B 186 17.60 b.1.2.1,b.1.2.1 21988,21989 3l5iA 290 17.77 1fnhA 271 18.33 b.1.2.1,b.1.2.1,b.1.2.1 21976,21977,21978 3c99A 432 18.38 2oitA 434 19.67 1fnf 368 20.34 2nqcA 138 22.22 b.1.18.10 148344 1ojrA 274 24.09 c.74.1.1 93147 2tbvA 387 24.34 b.121.4.7 23302 1qfhA 212 24.75 b.1.18.10,b.1.18.10 21893,21894 2bi0A 337 26.01 d.38.1.4,d.38.1.4 128565,128566 1cwvA 492 26.77 b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 3lk42 277 27.28 1vjuA 309 27.72 d.248.1.1 100835 3l6pA 236 28.00 1iamA 185 28.39 b.1.1.3,b.1.1.4 21653,21689 3iytA 1263 29.63 1sva1 361 30.22 3lngA 215 30.36 2p4oA 306 31.56 b.68.6.3 149216 3cfsB 414 34.56 1h2wA 710 34.66 b.69.7.1,c.69.1.4 76596,76597 2h14A 317 36.28 1qr4A 186 37.05 b.1.2.1,b.1.2.1 21986,21987 3frxA 319 37.83 3i2nA 357 39.72 2qr5A 582 40.10 b.69.7.2,c.69.1.33 151278,151279 3k5rA 218 40.32 2gu3A 136 40.63 d.17.1.6,d.17.1.6 147178,147179 3eifA 936 41.35 1a0rB 340 42.94 b.69.4.1 27658 1ebaA 215 43.36 b.1.2.1,b.1.2.1 22015,22016 2geeA 203 43.53 1vemA 516 43.87 b.3.1.1,c.1.8.1 120021,120022 1bquA 215 44.77 b.1.2.1,b.1.2.1 22066,22067 3hn3A 613 44.91 2bcjB 340 45.34 b.69.4.1 128289 2oz4A 265 47.08 b.1.1.3,b.1.1.4,b.1.1.4 149099,149100,149101 1qa9A 102 48.63 b.1.1.1 19742 1k32A 1045 49.59 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1pz4A 116 49.74 d.106.1.1 95400 2dmcA 116 50.03 b.1.18.10 131572 3bp6B 202 50.23 1epfA 191 50.49 b.1.1.4,b.1.1.4 21694,21695 3emhA 318 51.29 1v05A 96 52.69 b.1.18.10 113465 1wckA 220 52.86 2z5wA 136 53.43 1ebpA 211 54.38 b.1.2.1,b.1.2.1 22023,22024 3cnkA 89 56.28 1f2qA 176 57.01 b.1.1.4,b.1.1.4 21789,21790 3jrqB 186 57.38 1itcA 516 59.10 b.3.1.1,c.1.8.1 83705,83706 1fnlA 175 60.49 b.1.1.4,b.1.1.4 21783,21784 3bp5B 202 65.15 3mmyA 368 65.79 1iktA 120 66.07 d.106.1.1 66188 3hhrB 203 67.01 b.1.2.1,b.1.2.1 22005,22006 1cczA 171 67.50 b.1.1.1,b.1.1.3 19758,21683 1id2A 106 67.57 b.6.1.1 62288 3lniA 213 68.43 1qqsA 174 68.53 b.60.1.1 27143 1j83A 180 68.94 b.18.1.12 66430 1f00I 282 69.55 b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 2gnqA 336 70.12 3greA 437 70.13 1gotB 340 71.25 b.69.4.1 27648 3lqaC 192 71.93 1b9zA 516 72.92 b.3.1.1,c.1.8.1 22528,28798 1erjA 393 73.13 b.69.4.1 27660 2v44A 189 73.27 3lnhA 213 74.50 1zxqA 192 75.81 b.1.1.3,b.1.1.4 21657,21693 2b5iC 199 76.06 b.1.2.1,b.1.2.1 127898,127899 2oklA 185 77.71 3jz7A 214 79.89 2x41A 721 80.61 3luuA 101 80.78 3k1uA 330 81.42 3lneA 213 82.67 2pkdA 111 82.86 1w0nA 131 84.83 b.18.1.28 114069 3ei3B 383 88.25