# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2c4xA 260 1.77e-12 1l0qA 391 2.31e-10 b.1.3.1,b.69.2.3 77644,77645 1b4rA 80 1.83e-09 b.1.3.1 22072 2wg3C 463 0.000388 2yrlA 102 0.03463 1wgoA 123 0.04538 b.1.3.1 114618 2e7mA 113 0.4561 3c12A 138 1.368 1f6fB 210 2.286 b.1.2.1,b.1.2.1 22033,22034 2hqsA 415 2.491 b.68.4.1,c.51.2.1 136662,136663 1hnfA 182 2.911 b.1.1.1,b.1.1.3 19741,21680 3duhA 314 3.003 b.1.1.4,b.1.2.1,b.1.2.1 157882,157883,157884 2kpnA 103 3.401 1f42A 306 4.629 b.1.1.4,b.1.2.1,b.1.2.1 59636,59637,59638 1gt7A 274 5.143 c.74.1.1 70398 1cwvA 492 6.196 b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 2gbaA 105 6.451 1qfhA 212 7.704 b.1.18.10,b.1.18.10 21893,21894 2iepA 192 8.987 1kdjA 102 9.259 b.6.1.1 22864 1v05A 96 11.55 b.1.18.10 113465 1crzA 403 12.18 b.68.4.1,c.51.2.1 27629,33211 3eifA 936 13.28 1hnf 182 14.15 1fnf 368 14.72 1epfA 191 14.92 b.1.1.4,b.1.1.4 21694,21695 2vduB 450 16.72 2nqcA 138 17.49 b.1.18.10 148344 1iamA 185 18.08 b.1.1.3,b.1.1.4 21653,21689 1h2wA 710 18.67 b.69.7.1,c.69.1.4 76596,76597 2jixB 225 18.91 b.1.2.1,b.1.2.1 148107,148108 3lk42 277 19.91 3cnkA 89 20.17 2oz4A 265 20.72 b.1.1.3,b.1.1.4,b.1.1.4 149099,149100,149101 3k5rA 218 21.17 1vpsA 289 21.26 b.121.6.1 23336 1utcA 363 21.52 a.118.1.4,b.69.6.1 99914,99915 3c99A 432 23.61 1ojrA 274 23.84 c.74.1.1 93147 2bi0A 337 24.17 d.38.1.4,d.38.1.4 128565,128566 2dmcA 116 25.62 b.1.18.10 131572 1fnhA 271 25.64 b.1.2.1,b.1.2.1,b.1.2.1 21976,21977,21978 1fnlA 175 27.17 b.1.1.4,b.1.1.4 21783,21784 1j83A 180 27.67 b.18.1.12 66430 2p4oA 306 28.53 b.68.6.3 149216 1nexB 464 30.58 a.158.1.1,b.69.4.1 80443,80444 1bquA 215 30.86 b.1.2.1,b.1.2.1 22066,22067 1sva1 361 32.05 1k32A 1045 32.34 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 3l5iA 290 32.71 2o26U 290 32.71 3k1uA 330 32.90 1pz4A 116 35.46 d.106.1.1 95400 1vjuA 309 35.99 d.248.1.1 100835 3cpnA 330 37.09 3frxA 319 37.18 1qr4B 186 37.81 b.1.2.1,b.1.2.1 21988,21989 3bp6B 202 37.95 1qr4A 186 38.33 b.1.2.1,b.1.2.1 21986,21987 1f2qA 176 39.12 b.1.1.4,b.1.1.4 21789,21790 3lqaC 192 39.92 2tbvA 387 40.73 b.121.4.7 23302 1ebpA 211 40.80 b.1.2.1,b.1.2.1 22023,22024 2v44A 189 41.61 3l6pA 236 41.74 3cfsB 414 42.73 1itbB 315 42.83 b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 3lneA 213 47.34 1itcA 516 48.97 b.3.1.1,c.1.8.1 83705,83706 2pkdA 111 49.17 1cczA 171 50.42 b.1.1.1,b.1.1.3 19758,21683 3lnfA 213 51.86 2zahA 331 54.34 1q55A 880 56.28 i.20.1.1 95862 3bp5B 202 56.63 3kolA 156 56.81 1w0nA 131 56.85 b.18.1.28 114069 1iktA 120 57.63 d.106.1.1 66188 3lngA 215 59.41 1zxqA 192 60.78 b.1.1.3,b.1.1.4 21657,21693 1b9zA 516 61.05 b.3.1.1,c.1.8.1 22528,28798 2z5wA 136 61.25 2oitA 434 61.59 2b5iC 199 61.66 b.1.2.1,b.1.2.1 127898,127899 2jhmF 218 61.80 1ebaA 215 62.37 b.1.2.1,b.1.2.1 22015,22016 3d85D 306 62.49 b.1.1.4,b.1.2.1,b.1.2.1 157439,157440,157441 3lniA 213 64.76 2geeA 203 64.86 3gleA 295 65.53 1l6zA 216 66.87 b.1.1.1,b.1.1.4 77770,77771 1erjA 393 67.70 b.69.4.1 27660 2zqkA 189 68.06 1cd9B 215 68.78 b.1.2.1,b.1.2.1 22041,22042 2wg4B 457 68.80 1wckA 220 68.95 3lnhA 213 70.43 2aexA 346 71.23 1id2A 106 71.37 b.6.1.1 62288 3hhrB 203 71.57 b.1.2.1,b.1.2.1 22005,22006 1qqsA 174 72.63 b.60.1.1 27143 2co7B 221 73.59 b.1.11.1,b.7.2.1 145049,145050 3g7dA 443 75.19 3jz7A 214 75.81 1rhfA 182 76.03 b.1.1.1,b.1.1.4 97469,97470 3e8vA 82 76.07 1ev2E 220 76.96 b.1.1.4,b.1.1.4 21738,21739 1a0rB 340 77.99 b.69.4.1 27658 1eerB 227 78.05 b.1.2.1,b.1.2.1 22011,22012 2brqA 97 78.44 b.1.18.10 129008 3ia8A 163 78.84 3lk2B 243 79.00 2gu3A 136 80.03 d.17.1.6,d.17.1.6 147178,147179 3cjjA 219 80.24 2d7nA 93 82.72 b.1.18.10 131322 2j7nA 1022 83.75 3bjqA 316 83.84 1opoA 348 84.03 b.121.4.7 87240 3exzA 154 85.26 3jrqB 186 86.68 2x41A 721 86.78 1dpeA 507 87.45 c.94.1.1 35799 2qr5A 582 87.53 b.69.7.2,c.69.1.33 151278,151279