# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l0qA 391 7.73e-09 b.1.3.1,b.69.2.3 77644,77645 2c4xA 260 1.52e-07 1b4rA 80 9.06e-06 b.1.3.1 22072 2e7mA 113 0.000516 2yrlA 102 0.000937 1wgoA 123 0.04385 b.1.3.1 114618 2wg4B 457 0.09321 2o26U 290 0.1533 1vcaA 202 0.2008 b.1.1.3,b.1.1.4 21649,21685 2v5mA 388 0.2719 1hnfA 182 0.3904 b.1.1.1,b.1.1.3 19741,21680 3ejjX 289 0.4412 2ny1B 184 0.4989 b.1.1.1,b.1.1.3 138764,138765 3jz7A 214 0.7447 2kpnA 103 0.7784 3grwA 241 0.7867 2v5sA 394 0.8704 2fcbA 173 0.9813 b.1.1.4,b.1.1.4 21781,21782 3lqaC 192 1.158 3l5iA 290 1.160 1cfb 205 1.297 2w1nA 238 1.300 1cwvA 492 1.408 b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 3bp6B 202 1.434 3l5jA 288 1.506 1f2qA 176 1.605 b.1.1.4,b.1.1.4 21789,21790 1uctA 218 1.615 b.1.1.4,b.1.1.4 88467,88468 2oz4A 265 1.677 b.1.1.3,b.1.1.4,b.1.1.4 149099,149100,149101 2x1wL 213 1.700 3bp5B 202 1.717 2petA 231 1.779 1rhfA 182 1.842 b.1.1.1,b.1.1.4 97469,97470 2v44A 189 1.976 2idqA 105 2.455 2wwkO 109 2.875 2iepA 192 2.962 3e0gA 483 2.982 1cczA 171 3.170 b.1.1.1,b.1.1.3 19758,21683 2ov0A 105 3.373 b.6.1.1 149033 1cfbA 205 3.745 b.1.2.1,b.1.2.1 21991,21992 1fhgA 154 3.813 b.1.1.4 21706 1cs6A 382 4.008 b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21760,21761,21762,21763 1itbB 315 4.047 b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 2j8hA 197 4.147 2x10A 545 4.216 1ev2E 220 4.290 b.1.1.4,b.1.1.4 21738,21739 1bqsA 209 4.391 b.1.1.4,b.1.1.4 21704,21705 2wp3O 109 4.450 1fnlA 175 4.586 b.1.1.4,b.1.1.4 21783,21784 3bn3B 196 4.655 3cjjA 219 4.693 3c7fA 487 4.853 2ee9A 95 5.065 2rikA 284 5.067 1zxqA 192 5.140 b.1.1.3,b.1.1.4 21657,21693 2kkqA 116 5.202 2wv3A 190 5.207 2kdgA 100 5.237 3knbA 100 5.340 2wp3T 102 5.383 3f7pC 248 5.628 1u2hA 99 5.656 1cdyA 178 5.684 b.1.1.1,b.1.1.3 19719,21658 1pazA 123 5.697 b.6.1.1 22878 3knbB 107 5.985 3irgA 100 6.008 1iamA 185 6.032 b.1.1.3,b.1.1.4 21653,21689 2jllA 389 6.931 3l5hA 589 6.962 3d48R 211 6.980 b.1.2.1,b.1.2.1 157289,157290 2illA 195 7.017 1cdy 178 7.360 2r15A 212 7.579 1bqkA 124 7.639 b.6.1.1 22889 3cafA 100 7.874 2dleA 104 7.952 2v9tA 117 8.083 1qfhA 212 8.204 b.1.18.10,b.1.18.10 21893,21894 3irgB 107 8.403 3darA 105 8.631 b.1.1.4 157466 1py0A 125 8.718 b.6.1.1 111645 2ux7A 122 9.558 1g1cA 99 9.597 b.1.1.4 65078 3lnfA 213 9.614 1zxq 192 9.703 1bqk 124 9.928 2yuzA 100 9.99 3kldA 384 10.08 2gbaA 105 10.67 2d7nA 93 10.92 b.1.18.10 131322 1epfA 191 11.74 b.1.1.4,b.1.1.4 21694,21695 2zr1B 267 11.75 3ef4A 124 11.83 1ugnA 198 12.32 b.1.1.4,b.1.1.4 107828,107829 1pmyA 123 12.71 b.6.1.1 22888 2a38A 194 12.72 2bk8A 97 12.86 2va4A 192 13.00 3duhA 314 13.33 b.1.1.4,b.1.2.1,b.1.2.1 157882,157883,157884 3c12A 138 13.52 2tbvA 387 13.93 b.121.4.7 23302 2k7qA 191 14.10 3lnhA 213 15.01 1f6fB 210 15.41 b.1.2.1,b.1.2.1 22033,22034 1gsmA 210 16.50 b.1.1.4,b.1.1.4 65535,65536 3bfoA 91 16.54 1v05A 96 16.97 b.1.18.10 113465 1id2A 106 16.98 b.6.1.1 62288 2wbxA 102 17.71 1ollA 188 17.73 b.1.1.4,b.1.1.4 93313,93314 1sfdA 105 17.99 b.6.1.1 105480 3lndA 207 18.37 4pazA 123 18.40 b.6.1.1 22881 2dmcA 116 18.42 b.1.18.10 131572 2w0pA 94 18.48 b.1.18.10 153738 3bevA 274 18.62 1f97A 212 19.00 b.1.1.1,b.1.1.4 19763,21764 1pbyB 337 19.52 b.69.2.2 94422 1q55A 880 19.94 i.20.1.1 95862 1fyhB 229 21.51 b.1.2.1,b.1.2.1 22055,22056 1q9rB 222 21.74 b.1.1.1,b.1.1.2 96307,96308 2nqcA 138 21.93 b.1.18.10 148344 1bxvA 91 22.71 b.6.1.1 22875 1gl4B 98 22.89 b.1.1.4 65288 3erxA 123 24.47 2fikA 287 24.80 b.1.1.2,d.19.1.1 133524,133525 1qg3A 195 24.85 b.1.2.1,b.1.2.1 21993,21994 1n26A 325 25.03 b.1.1.4,b.1.2.1,b.1.2.1 79850,79851,79852 3di2B 223 25.55 2hqsA 415 25.88 b.68.4.1,c.51.2.1 136662,136663 2ojhA 297 26.45 1y6kR 214 26.59 b.1.2.1,b.1.2.1 122663,122664 3f7qA 234 26.74 2x2uA 246 27.44 1t7vA 278 27.65 b.1.1.2,d.19.1.1 112302,112303 2durA 253 29.02 2pz4A 239 29.17 1wl7A 312 29.20 b.67.2.1 120996 1sznA 417 29.28 b.71.1.1,c.1.8.1 106162,106163 2zahA 331 29.69 1a0rB 340 29.87 b.69.4.1 27658 2h14A 317 31.01 3e5zA 296 31.60 1iuzA 98 31.69 b.6.1.1 22861 3kptA 355 32.34 3lniA 213 33.19 1a6zA 275 33.19 b.1.1.2,d.19.1.1 20781,38280 3h9yA 223 33.62 3b5hA 184 35.60 b.1.1.4,b.1.1.4 154838,154839 1lyqA 104 35.85 b.1.18.17 78302 1v04A 355 35.88 b.68.6.2 100240 2z2nA 299 36.21 3k5rA 218 37.12 2d3vA 196 37.66 2a74A 643 37.75 2yz8A 103 37.92 3k6fA 100 39.15 1kdjA 102 40.74 b.6.1.1 22864 3hr5B 226 41.35 2gc7A 386 41.51 b.69.2.1 134954 2qc5A 300 42.73 2gk3A 256 42.91 c.23.16.9 147123 2ch8A 201 43.93 2bc4A 211 44.39 1pjxA 314 45.15 b.68.6.1 104167 2wg3C 463 46.00 2dbjA 124 46.89 2im5A 394 47.68 3h8nA 195 48.12 1cd9B 215 48.15 b.1.2.1,b.1.2.1 22041,22042 1a22B 238 51.02 b.1.2.1,b.1.2.1 22003,22004 3c5mA 396 52.50 1nepA 130 53.44 b.1.18.7 80440 1d3cA 686 53.45 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1rurH 218 53.54 b.1.1.1,b.1.1.2 97879,97880 1waaA 93 53.56 1ofzA 312 53.60 b.68.8.1 86978 2gu3A 136 54.39 d.17.1.6,d.17.1.6 147178,147179 2pm7B 297 55.40 2fp8A 322 55.55 1wwcA 118 55.57 b.1.1.4 21778 1ukgA 252 55.67 b.29.1.1 99489 3acpA 417 55.81 2pbiB 354 56.25 1vemA 516 56.74 b.3.1.1,c.1.8.1 120021,120022 1m2tB 263 58.22 b.42.2.1,b.42.2.1 84762,84763 1ynlH 219 59.26 3bwsA 433 59.89 1he7A 126 60.34 b.1.1.4 60970 2q0zX 339 61.08 a.289.1.1,b.1.18.22 149993,149994 3clwA 507 61.30 1ag6A 99 61.38 b.6.1.1 22857 1gxrA 337 61.82 b.69.4.1 70722 1q7fA 286 62.61 b.68.9.1 96036 1bypA 99 62.67 b.6.1.1 22858 1op3H 225 62.75 b.1.1.1,b.1.1.2 87208,87209 3f7rA 249 63.33 3d9aH 210 63.46 1hqlA 257 63.57 b.29.1.1 65907 1cidA 177 65.59 b.1.1.1,b.1.1.3 19740,21679 1qr4A 186 65.79 b.1.2.1,b.1.2.1 21986,21987 3emhA 318 66.33 1ftpA 133 66.47 b.60.1.2 27199 3frxA 319 66.60 1nexB 464 66.77 a.158.1.1,b.69.4.1 80443,80444 1jdcA 429 67.43 b.71.1.1,c.1.8.1 27789,28776 1plcA 99 67.74 b.6.1.1 22846 1pz5B 220 67.89 b.1.1.1,b.1.1.2 95403,95404 2gnqA 336 68.17 3baeH 228 68.67 b.1.1.2 155029 1rwhA 757 68.97 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 3li5A 314 69.35 1axiB 236 69.48 b.1.2.1,b.1.2.1 21997,21998 2brqA 97 69.76 b.1.18.10 129008 2wklA 497 70.16 1wwbX 103 70.39 b.1.1.4 21777 3h55A 400 70.43 3gnzP 213 70.52 2dtqA 223 70.71 b.1.1.2,b.1.1.2 131725,131726 1vpsA 289 72.44 b.121.6.1 23336 3l1oH 227 72.74 2b5iC 199 73.92 b.1.2.1,b.1.2.1 127898,127899 2bcjB 340 74.61 b.69.4.1 128289 3hxjA 330 74.66 1kcvH 217 74.76 b.1.1.1,b.1.1.2 72315,72316 1nb9A 147 75.83 b.43.5.1 85515 1rxzA 245 75.87 d.131.1.2,d.131.1.2 98067,98068 1f00I 282 77.13 b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 2w9dH 215 77.27 3d85D 306 78.44 b.1.1.4,b.1.2.1,b.1.2.1 157439,157440,157441 3li4A 314 79.92 1gotB 340 80.51 b.69.4.1 27648 1jxgA 100 81.37 b.6.1.1 67413 3lneA 213 81.57 2k7pA 188 82.53 2ovrB 445 84.13 a.158.1.1,b.69.4.1 145735,145736 3a3pA 329 84.26 3ejvA 179 84.47 d.17.4.28 158181 3lngA 215 85.88 2eigA 234 86.86 2geeA 203 87.44 2jixB 225 88.37 b.1.2.1,b.1.2.1 148107,148108 2c9qA 102 89.07 b.1.18.17 130138 2ad6A 571 89.31 b.70.1.1 126568