# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l0qA 391 5.40e-09 b.1.3.1,b.69.2.3 77644,77645 2c4xA 260 1.48e-07 1b4rA 80 1.40e-05 b.1.3.1 22072 2e7mA 113 0.000765 2yrlA 102 0.001156 2wg4B 457 0.03445 1vcaA 202 0.06296 b.1.1.3,b.1.1.4 21649,21685 1wgoA 123 0.06359 b.1.3.1 114618 2o26U 290 0.1941 2v5mA 388 0.2717 1hnfA 182 0.3498 b.1.1.1,b.1.1.3 19741,21680 3ejjX 289 0.3654 2ny1B 184 0.6598 b.1.1.1,b.1.1.3 138764,138765 1cwvA 492 0.6647 b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 3l5jA 288 0.7505 1cfb 205 0.7988 1uctA 218 0.8321 b.1.1.4,b.1.1.4 88467,88468 2kpnA 103 0.8709 3f7pC 248 0.9060 2w1nA 238 1.021 1cfbA 205 1.026 b.1.2.1,b.1.2.1 21991,21992 3l5iA 290 1.108 3grwA 241 1.177 2v5sA 394 1.180 3jz7A 214 1.284 3lqaC 192 1.339 3bp6B 202 1.373 2fcbA 173 1.606 b.1.1.4,b.1.1.4 21781,21782 3bp5B 202 1.613 1rhfA 182 1.678 b.1.1.1,b.1.1.4 97469,97470 2ee9A 95 1.800 2x10A 545 1.822 2oz4A 265 1.831 b.1.1.3,b.1.1.4,b.1.1.4 149099,149100,149101 2petA 231 1.912 1cdyA 178 2.025 b.1.1.1,b.1.1.3 19719,21658 2x1wL 213 2.032 1fnlA 175 2.088 b.1.1.4,b.1.1.4 21783,21784 1cdy 178 2.273 2wwkO 109 2.454 2j8hA 197 2.488 2wv3A 190 2.519 1ugnA 198 2.584 b.1.1.4,b.1.1.4 107828,107829 3f7qA 234 2.730 1cczA 171 2.799 b.1.1.1,b.1.1.3 19758,21683 1f2qA 176 2.870 b.1.1.4,b.1.1.4 21789,21790 1zxq 192 2.889 2illA 195 3.139 1zxqA 192 3.150 b.1.1.3,b.1.1.4 21657,21693 1qfhA 212 3.230 b.1.18.10,b.1.18.10 21893,21894 2d7nA 93 3.289 b.1.18.10 131322 1itbB 315 3.320 b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 3e0gA 483 3.424 3l5hA 589 3.564 3f7rA 249 3.725 2wp3O 109 3.911 1fhgA 154 4.001 b.1.1.4 21706 1iamA 185 4.272 b.1.1.3,b.1.1.4 21653,21689 2iepA 192 4.553 2yuzA 100 4.710 1q55A 880 4.826 i.20.1.1 95862 2kkqA 116 4.875 1bqsA 209 4.888 b.1.1.4,b.1.1.4 21704,21705 1cs6A 382 5.039 b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21760,21761,21762,21763 2jllA 389 5.195 1v05A 96 5.227 b.1.18.10 113465 3knbB 107 5.337 2rikA 284 5.340 2idqA 105 5.380 3lnfA 213 5.786 1ev2E 220 6.008 b.1.1.4,b.1.1.4 21738,21739 3c7fA 487 6.042 2dmcA 116 6.096 b.1.18.10 131572 1u2hA 99 6.369 1qg3A 195 6.370 b.1.2.1,b.1.2.1 21993,21994 2fikA 287 6.570 b.1.1.2,d.19.1.1 133524,133525 2r15A 212 6.758 2wp3T 102 6.864 3cjjA 219 7.363 2kdgA 100 7.379 3irgB 107 7.410 3d48R 211 7.971 b.1.2.1,b.1.2.1 157289,157290 3knbA 100 8.333 2w0pA 94 8.620 b.1.18.10 153738 2zr1B 267 8.750 3irgA 100 8.924 1f97A 212 8.940 b.1.1.1,b.1.1.4 19763,21764 3bn3B 196 9.151 1ollA 188 9.697 b.1.1.4,b.1.1.4 93313,93314 3lndA 207 9.905 2dleA 104 10.42 3c12A 138 10.76 2ov0A 105 11.11 b.6.1.1 149033 2k7qA 191 11.84 2bk8A 97 11.88 1pazA 123 12.17 b.6.1.1 22878 1pbyB 337 12.29 b.69.2.2 94422 3kldA 384 12.30 1f6fB 210 12.39 b.1.2.1,b.1.2.1 22033,22034 2nqcA 138 12.76 b.1.18.10 148344 1bqkA 124 13.10 b.6.1.1 22889 1g1cA 99 13.13 b.1.1.4 65078 1n26A 325 13.21 b.1.1.4,b.1.2.1,b.1.2.1 79850,79851,79852 2v9tA 117 13.29 1fyhB 229 13.66 b.1.2.1,b.1.2.1 22055,22056 1epfA 191 14.94 b.1.1.4,b.1.1.4 21694,21695 3cafA 100 15.46 3bevA 274 15.56 1wlgA 299 15.72 b.152.1.1 114726 3darA 105 15.77 b.1.1.4 157466 2brqA 97 16.00 b.1.18.10 129008 1y6kR 214 17.04 b.1.2.1,b.1.2.1 122663,122664 1gl4B 98 17.18 b.1.1.4 65288 2va4A 192 17.47 2gbaA 105 17.63 2k7pA 188 18.17 3lnhA 213 18.64 1a6zA 275 18.80 b.1.1.2,d.19.1.1 20781,38280 1q9rB 222 19.02 b.1.1.1,b.1.1.2 96307,96308 2wbxA 102 19.19 1t7vA 278 19.33 b.1.1.2,d.19.1.1 112302,112303 3hr5B 226 19.76 1bqk 124 20.11 2h26A 291 20.78 b.1.1.2,d.19.1.1 135990,135991 2dbjA 124 20.83 1py0A 125 21.38 b.6.1.1 111645 1gsmA 210 21.45 b.1.1.4,b.1.1.4 65535,65536 3di2B 223 22.21 2ch8A 201 22.37 1cd9B 215 22.97 b.1.2.1,b.1.2.1 22041,22042 3bfoA 91 23.18 2blfA 373 24.08 1hqlA 257 24.14 b.29.1.1 65907 1ukgA 252 24.49 b.29.1.1 99489 4pazA 123 24.77 b.6.1.1 22881 3ef4A 124 24.78 2b5iC 199 24.95 b.1.2.1,b.1.2.1 127898,127899 2yz8A 103 25.27 3b5hA 184 25.27 b.1.1.4,b.1.1.4 154838,154839 2eigA 234 25.97 1ledA 243 26.54 b.29.1.1 24039 2v44A 189 26.82 2x2uA 246 27.35 3e5zA 296 27.51 2a38A 194 27.58 1rxzA 245 28.59 d.131.1.2,d.131.1.2 98067,98068 1v6iA 232 30.29 b.29.1.1 100383 3cnkA 89 30.60 1nepA 130 30.65 b.1.18.7 80440 3kptA 355 30.90 3iswA 99 31.38 2ux7A 122 31.90 2pz4A 239 32.24 3lniA 213 32.72 2d3vA 196 32.83 1sfdA 105 33.12 b.6.1.1 105480 3h9yA 223 33.30 3h8nA 195 34.23 1id2A 106 34.65 b.6.1.1 62288 1pmyA 123 35.13 b.6.1.1 22888 1d3cA 686 35.26 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1waaA 93 35.37 2jixB 225 35.56 b.1.2.1,b.1.2.1 148107,148108 3duhA 314 35.58 b.1.1.4,b.1.2.1,b.1.2.1 157882,157883,157884 1bxvA 91 36.01 b.6.1.1 22875 2dtqA 223 36.86 b.1.1.2,b.1.1.2 131725,131726 1wisA 124 39.07 b.1.2.1 120975 1op3H 225 39.91 b.1.1.1,b.1.1.2 87208,87209 1xh3A 276 39.99 b.1.1.2,d.19.1.1 115287,115288 2j6gA 266 40.31 1jxgA 100 41.04 b.6.1.1 67413 3dlqR 211 41.04 1lyqA 104 41.56 b.1.18.17 78302 1wwcA 118 42.15 b.1.1.4 21778 2ojhA 297 42.34 1qr4A 186 42.70 b.1.2.1,b.1.2.1 21986,21987 1ofzA 312 43.18 b.68.8.1 86978 3hxjA 330 44.26 2zahA 331 44.42 1k2dB 189 44.70 b.1.1.2,d.19.1.1 84293,84294 3e6hA 275 44.87 3dmmA 275 44.89 3d9aH 210 45.40 3d1mC 102 45.65 1jk8B 190 45.90 b.1.1.2,d.19.1.1 63147,63148 1gzcA 239 45.99 b.29.1.1 70803 1q0xH 221 46.30 b.1.1.1,b.1.1.2 95517,95518 1a22B 238 46.36 b.1.2.1,b.1.2.1 22003,22004 3baeH 228 46.70 b.1.1.2 155029 2hwzH 227 46.94 1rurH 218 46.99 b.1.1.1,b.1.1.2 97879,97880 1ncwH 222 47.03 b.1.1.1,b.1.1.2 85555,85556 1iuzA 98 47.53 b.6.1.1 22861 2geeA 203 48.10 2yxmA 100 48.11 3k6fA 100 48.18 3bwaA 276 48.72 b.1.1.2,d.19.1.1 155683,155684 2gk3A 256 50.07 c.23.16.9 147123 2tbvA 387 50.59 b.121.4.7 23302 2h14A 317 50.96 3eysH 223 51.34 3ecbA 277 51.82 3lneA 213 52.94 3acpA 417 53.62 3lf7A 634 54.42 1kdjA 102 55.07 b.6.1.1 22864 2bgzA 299 55.86 1q7fA 286 56.11 b.68.9.1 96036 2pm7B 297 56.98 1lk2A 274 57.44 b.1.1.2,d.19.1.1 91056,91057 2gysA 419 57.60 b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1 135865,135866,135867,135868 1a0rB 340 57.82 b.69.4.1 27658 3erxA 123 58.54 2fp8A 322 60.03 1axiB 236 60.28 b.1.2.1,b.1.2.1 21997,21998 1pz5B 220 60.70 b.1.1.1,b.1.1.2 95403,95404 1mjuH 227 64.12 b.1.1.1,b.1.1.2 91302,91303 3frxA 319 64.15 1n0xL 215 64.71 b.1.1.1,b.1.1.2 91532,91533 3c5mA 396 64.87 1ynlH 219 64.94 2ad6A 571 65.00 b.70.1.1 126568 1sznA 417 65.09 b.71.1.1,c.1.8.1 106162,106163 2gu3A 136 66.70 d.17.1.6,d.17.1.6 147178,147179 2wklA 497 66.82 3c9xA 329 68.03 3bz4B 217 68.41 1pjxA 314 68.82 b.68.6.1 104167 1gxrA 337 69.03 b.69.4.1 70722 3emhA 318 69.28 3k5rA 218 69.54 2gnqA 336 70.55 2b5iB 214 70.86 b.1.2.1,b.1.2.1 127896,127897 3gleA 295 71.09 1ag6A 99 71.15 b.6.1.1 22857 2bcjB 340 71.39 b.69.4.1 128289 1he7A 126 71.46 b.1.1.4 60970 1a1nA 276 72.03 b.1.1.2,d.19.1.1 20755,38267 2c9qA 102 72.58 b.1.18.17 130138 3lzfH 230 72.96 2bc4A 211 73.16 2a74A 643 74.83 2pbiB 354 75.16 1mexH 215 75.28 b.1.1.1,b.1.1.2 91257,91258 2durA 253 75.50 1nkr 201 75.56 3lngA 215 76.09 3l1oH 227 76.20 3cpnA 330 76.50 2cpcA 113 77.18 1eerB 227 78.34 b.1.2.1,b.1.2.1 22011,22012 3d85D 306 78.65 b.1.1.4,b.1.2.1,b.1.2.1 157439,157440,157441 1fngA 192 79.21 b.1.1.2,d.19.1.1 59904,59905 1l6xA 207 80.10 b.1.1.2,b.1.1.2 73642,73643 1iakB 185 80.26 b.1.1.2,d.19.1.1 21626,38200 1k5nA 276 80.29 b.1.1.2,d.19.1.1 77266,77267 3dbxA 289 81.09 1fx5A 242 81.39 b.29.1.1 24135 1becA 238 81.46 b.1.1.1,b.1.1.2 20627,21561 2w1wA 146 84.52 1mjuL 219 84.55 b.1.1.1,b.1.1.2 91304,91305 3kynA 275 85.01 3clwA 507 85.76 1nkrA 201 86.07 b.1.1.4,b.1.1.4 21799,21800 1bquA 215 86.26 b.1.2.1,b.1.2.1 22066,22067 1uz8B 212 86.80 b.1.1.1,b.1.1.2 108168,108169 3cfbB 213 87.57 1gotB 340 87.76 b.69.4.1 27648 1avbA 226 87.76 b.29.1.1 24158 3lmjH 231 88.90 3kymA 214 88.99 3li5A 314 89.03 3lqmA 201 89.28