# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l0qA 391 1.95e-09 b.1.3.1,b.69.2.3 77644,77645 2c4xA 260 5.11e-08 1b4rA 80 5.68e-06 b.1.3.1 22072 2e7mA 113 0.000167 2yrlA 102 0.000512 2wg4B 457 0.009850 1wgoA 123 0.05115 b.1.3.1 114618 1vcaA 202 0.1679 b.1.1.3,b.1.1.4 21649,21685 2o26U 290 0.1859 2v5mA 388 0.4044 1hnfA 182 0.4603 b.1.1.1,b.1.1.3 19741,21680 3ejjX 289 0.5165 1cfb 205 0.5229 3jz7A 214 0.9664 2kpnA 103 0.9696 3lqaC 192 0.9889 2fcbA 173 0.9920 b.1.1.4,b.1.1.4 21781,21782 3grwA 241 1.026 3l5iA 290 1.042 3l5jA 288 1.057 3bp5B 202 1.229 2x1wL 213 1.267 1cfbA 205 1.397 b.1.2.1,b.1.2.1 21991,21992 1cwvA 492 1.405 b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 2v5sA 394 1.511 2x10A 545 1.525 2ny1B 184 1.556 b.1.1.1,b.1.1.3 138764,138765 2w1nA 238 1.600 1uctA 218 1.618 b.1.1.4,b.1.1.4 88467,88468 1f2qA 176 1.688 b.1.1.4,b.1.1.4 21789,21790 2oz4A 265 1.703 b.1.1.3,b.1.1.4,b.1.1.4 149099,149100,149101 2idqA 105 1.792 3bp6B 202 2.203 2wwkO 109 2.314 2ov0A 105 2.460 b.6.1.1 149033 1zxqA 192 2.520 b.1.1.3,b.1.1.4 21657,21693 1rhfA 182 2.542 b.1.1.1,b.1.1.4 97469,97470 1pazA 123 2.546 b.6.1.1 22878 2j8hA 197 2.563 1fnlA 175 2.659 b.1.1.4,b.1.1.4 21783,21784 3l5hA 589 2.676 1cdyA 178 3.080 b.1.1.1,b.1.1.3 19719,21658 2yuzA 100 3.098 1cczA 171 3.108 b.1.1.1,b.1.1.3 19758,21683 1bqkA 124 3.187 b.6.1.1 22889 3f7pC 248 3.233 2petA 231 3.270 1fhgA 154 3.403 b.1.1.4 21706 1cs6A 382 3.430 b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21760,21761,21762,21763 3e0gA 483 3.444 2wv3A 190 3.469 2wp3O 109 3.597 1itbB 315 3.798 b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 2kkqA 116 3.898 1py0A 125 3.966 b.6.1.1 111645 2ee9A 95 4.091 2kdgA 100 4.487 1bqsA 209 4.496 b.1.1.4,b.1.1.4 21704,21705 1u2hA 99 4.538 2rikA 284 4.687 3c7fA 487 4.691 2wp3T 102 4.757 3knbA 100 4.813 4pazA 123 4.897 b.6.1.1 22881 3knbB 107 4.947 2illA 195 5.199 3ef4A 124 5.277 3cafA 100 5.393 2iepA 192 5.401 3irgA 100 5.502 1q55A 880 5.503 i.20.1.1 95862 2dleA 104 5.875 1bqk 124 6.091 1ev2E 220 6.356 b.1.1.4,b.1.1.4 21738,21739 3bn3B 196 6.413 2r15A 212 6.437 3d48R 211 6.505 b.1.2.1,b.1.2.1 157289,157290 3irgB 107 6.551 1cdy 178 6.963 3darA 105 7.025 b.1.1.4 157466 1zxq 192 7.055 1g1cA 99 7.263 b.1.1.4 65078 1iamA 185 7.510 b.1.1.3,b.1.1.4 21653,21689 1qfhA 212 7.656 b.1.18.10,b.1.18.10 21893,21894 2zr1B 267 8.109 3lnfA 213 8.300 1n26A 325 8.763 b.1.1.4,b.1.2.1,b.1.2.1 79850,79851,79852 2gbaA 105 8.812 2bk8A 97 8.928 2jllA 389 8.995 2v44A 189 9.329 3cjjA 219 9.340 2d7nA 93 9.741 b.1.18.10 131322 1ugnA 198 9.770 b.1.1.4,b.1.1.4 107828,107829 2w0pA 94 10.54 b.1.18.10 153738 2fikA 287 10.94 b.1.1.2,d.19.1.1 133524,133525 2v9tA 117 11.44 1v05A 96 11.81 b.1.18.10 113465 1bxvA 91 13.05 b.6.1.1 22875 1pmyA 123 13.28 b.6.1.1 22888 3c12A 138 13.45 2ux7A 122 14.09 3duhA 314 14.48 b.1.1.4,b.1.2.1,b.1.2.1 157882,157883,157884 1sfdA 105 14.65 b.6.1.1 105480 1f6fB 210 15.27 b.1.2.1,b.1.2.1 22033,22034 2k7qA 191 15.34 3lndA 207 15.88 1ollA 188 16.14 b.1.1.4,b.1.1.4 93313,93314 2dmcA 116 16.76 b.1.18.10 131572 2nqcA 138 16.78 b.1.18.10 148344 1gl4B 98 17.30 b.1.1.4 65288 2a38A 194 17.59 1epfA 191 17.77 b.1.1.4,b.1.1.4 21694,21695 2brqA 97 17.80 b.1.18.10 129008 1id2A 106 18.01 b.6.1.1 62288 3f7rA 249 18.42 3kldA 384 18.45 2va4A 192 18.45 3bevA 274 18.80 3lnhA 213 18.97 1iuzA 98 19.51 b.6.1.1 22861 1gsmA 210 19.56 b.1.1.4,b.1.1.4 65535,65536 3f7qA 234 19.58 3clwA 507 19.92 1f97A 212 19.96 b.1.1.1,b.1.1.4 19763,21764 3di2B 223 20.05 1fyhB 229 20.19 b.1.2.1,b.1.2.1 22055,22056 3bfoA 91 20.54 3erxA 123 20.55 2yz8A 103 21.10 1kdjA 102 21.63 b.6.1.1 22864 1y6kR 214 21.64 b.1.2.1,b.1.2.1 122663,122664 2pz4A 239 21.68 1qg3A 195 22.47 b.1.2.1,b.1.2.1 21993,21994 2zahA 331 24.05 3kptA 355 24.88 3b5hA 184 25.76 b.1.1.4,b.1.1.4 154838,154839 3e5zA 296 26.03 1jxgA 100 26.42 b.6.1.1 67413 2wbxA 102 27.25 2wg3C 463 28.10 1lyqA 104 28.36 b.1.18.17 78302 2durA 253 28.42 2tbvA 387 28.51 b.121.4.7 23302 1sznA 417 29.02 b.71.1.1,c.1.8.1 106162,106163 1waaA 93 30.47 1a6zA 275 32.10 b.1.1.2,d.19.1.1 20781,38280 1ag6A 99 32.37 b.6.1.1 22857 2x2uA 246 32.69 1wl7A 312 33.08 b.67.2.1 120996 1cd9B 215 34.13 b.1.2.1,b.1.2.1 22041,22042 2ojhA 297 34.14 2yxmA 100 34.29 2im5A 394 35.98 1m2tB 263 36.70 b.42.2.1,b.42.2.1 84762,84763 1k2dB 189 37.39 b.1.1.2,d.19.1.1 84293,84294 2ch8A 201 38.29 1hqlA 257 38.35 b.29.1.1 65907 2k7pA 188 39.51 1bypA 99 41.14 b.6.1.1 22858 2jixB 225 41.82 b.1.2.1,b.1.2.1 148107,148108 1plcA 99 42.03 b.6.1.1 22846 1t7vA 278 43.51 b.1.1.2,d.19.1.1 112302,112303 2h26A 291 44.25 b.1.1.2,d.19.1.1 135990,135991 1rwhA 757 44.48 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1ofzA 312 44.53 b.68.8.1 86978 3lniA 213 44.94 1nepA 130 46.48 b.1.18.7 80440 2z2nA 299 46.67 1wwcA 118 47.03 b.1.1.4 21778 1xh3A 276 47.23 b.1.1.2,d.19.1.1 115287,115288 1q7fA 286 49.16 b.68.9.1 96036 1axiB 236 49.19 b.1.2.1,b.1.2.1 21997,21998 2eigA 234 49.70 1ukgA 252 49.98 b.29.1.1 99489 3iswA 99 50.06 2cpcA 113 51.38 1pbyB 337 51.42 b.69.2.2 94422 3k6fA 100 53.44 1wlgA 299 55.50 b.152.1.1 114726 1d3cA 686 56.14 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 2h14A 317 57.73 2d3vA 196 57.78 3h55A 400 58.21 1vemA 516 59.54 b.3.1.1,c.1.8.1 120021,120022 3e6hA 275 59.85 2pltA 98 62.02 b.6.1.1 22862 2b5iB 214 62.05 b.1.2.1,b.1.2.1 127896,127897 3k5rA 218 62.31 1plc 99 62.38 1rxzA 245 62.67 d.131.1.2,d.131.1.2 98067,98068 2dbjA 124 63.13 1wwbX 103 63.61 b.1.1.4 21777 2b5iC 199 63.87 b.1.2.1,b.1.2.1 127898,127899 3acpA 417 64.14 3bwaA 276 64.52 b.1.1.2,d.19.1.1 155683,155684 1he7A 126 65.10 b.1.1.4 60970 1a0rB 340 65.28 b.69.4.1 27658 2gu3A 136 65.44 d.17.1.6,d.17.1.6 147178,147179 3ecbA 277 65.91 2bc4A 211 66.74 3dmmA 275 67.15 2htaA 309 67.92 1v04A 355 69.60 b.68.6.2 100240 2ww8A 893 70.31 2wklA 497 70.62 3c5mA 396 71.95 3lneA 213 72.01 2hb0A 369 72.11 3gnzP 213 73.25 1jk8B 190 74.64 b.1.1.2,d.19.1.1 63147,63148 1a22B 238 74.67 b.1.2.1,b.1.2.1 22003,22004 2gc7A 386 76.63 b.69.2.1 134954 2fp8A 322 78.83 1pjxA 314 79.39 b.68.6.1 104167 1kdj 102 82.01 2blfA 373 82.34 3dhvA 512 83.09 2gk3A 256 83.44 c.23.16.9 147123 3d85D 306 84.77 b.1.1.4,b.1.2.1,b.1.2.1 157439,157440,157441 2qc5A 300 85.50 3li5A 314 87.04 2geeA 203 87.81 2q0zX 339 88.21 a.289.1.1,b.1.18.22 149993,149994 1nexB 464 88.22 a.158.1.1,b.69.4.1 80443,80444 2a74A 643 88.82 2c9qA 102 89.90 b.1.18.17 130138