# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l0qA 391 1.59e-09 b.1.3.1,b.69.2.3 77644,77645 2c4xA 260 4.34e-08 1b4rA 80 5.06e-06 b.1.3.1 22072 2e7mA 113 0.000172 2yrlA 102 0.000476 2wg4B 457 0.008819 1wgoA 123 0.04788 b.1.3.1 114618 1vcaA 202 0.1415 b.1.1.3,b.1.1.4 21649,21685 2o26U 290 0.2035 1hnfA 182 0.4600 b.1.1.1,b.1.1.3 19741,21680 2v5mA 388 0.4632 1cfb 205 0.5407 3ejjX 289 0.5488 2kpnA 103 0.9835 3lqaC 192 0.9923 3l5jA 288 1.000 3l5iA 290 1.045 2fcbA 173 1.138 b.1.1.4,b.1.1.4 21781,21782 3grwA 241 1.191 1cwvA 492 1.203 b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 3jz7A 214 1.223 2x10A 545 1.237 3bp5B 202 1.276 2x1wL 213 1.477 1cfbA 205 1.485 b.1.2.1,b.1.2.1 21991,21992 2ny1B 184 1.584 b.1.1.1,b.1.1.3 138764,138765 2v5sA 394 1.666 2w1nA 238 1.728 1uctA 218 1.780 b.1.1.4,b.1.1.4 88467,88468 2oz4A 265 1.929 b.1.1.3,b.1.1.4,b.1.1.4 149099,149100,149101 2idqA 105 2.177 1f2qA 176 2.250 b.1.1.4,b.1.1.4 21789,21790 2j8hA 197 2.620 3bp6B 202 2.699 1pazA 123 2.704 b.6.1.1 22878 2wwkO 109 2.739 1rhfA 182 2.750 b.1.1.1,b.1.1.4 97469,97470 3l5hA 589 2.838 1bqkA 124 2.901 b.6.1.1 22889 2ov0A 105 2.916 b.6.1.1 149033 1fnlA 175 3.130 b.1.1.4,b.1.1.4 21783,21784 1zxqA 192 3.137 b.1.1.3,b.1.1.4 21657,21693 1itbB 315 3.297 b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 2petA 231 3.476 2yuzA 100 3.498 1cdyA 178 3.614 b.1.1.1,b.1.1.3 19719,21658 3e0gA 483 3.661 1fhgA 154 3.834 b.1.1.4 21706 2wv3A 190 3.865 1cs6A 382 3.892 b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21760,21761,21762,21763 3f7pC 248 3.892 2ee9A 95 4.055 1cczA 171 4.074 b.1.1.1,b.1.1.3 19758,21683 2kkqA 116 4.211 2wp3O 109 4.322 1py0A 125 4.424 b.6.1.1 111645 1bqsA 209 4.567 b.1.1.4,b.1.1.4 21704,21705 3c7fA 487 4.816 2wp3T 102 5.001 3knbA 100 5.105 2kdgA 100 5.168 2illA 195 5.186 4pazA 123 5.190 b.6.1.1 22881 3knbB 107 5.677 3ef4A 124 5.724 2rikA 284 5.743 1bqk 124 5.770 1u2hA 99 5.790 3irgA 100 5.795 3cafA 100 5.912 3bn3B 196 6.207 1q55A 880 6.330 i.20.1.1 95862 3d48R 211 6.382 b.1.2.1,b.1.2.1 157289,157290 2dleA 104 6.493 2iepA 192 6.918 1iamA 185 7.055 b.1.1.3,b.1.1.4 21653,21689 3darA 105 7.238 b.1.1.4 157466 1qfhA 212 7.355 b.1.18.10,b.1.18.10 21893,21894 3irgB 107 7.447 1zxq 192 7.530 1ev2E 220 7.666 b.1.1.4,b.1.1.4 21738,21739 2zr1B 267 7.993 2r15A 212 8.204 3lnfA 213 8.345 1g1cA 99 8.477 b.1.1.4 65078 2v44A 189 8.600 1cdy 178 8.784 2d7nA 93 8.997 b.1.18.10 131322 3cjjA 219 9.473 2bk8A 97 9.548 2gbaA 105 9.554 2fikA 287 10.08 b.1.1.2,d.19.1.1 133524,133525 1n26A 325 10.67 b.1.1.4,b.1.2.1,b.1.2.1 79850,79851,79852 2w0pA 94 11.05 b.1.18.10 153738 1ugnA 198 11.36 b.1.1.4,b.1.1.4 107828,107829 2jllA 389 11.78 2v9tA 117 12.96 3c12A 138 13.67 1v05A 96 13.82 b.1.18.10 113465 2dmcA 116 14.71 b.1.18.10 131572 1bxvA 91 14.98 b.6.1.1 22875 1pmyA 123 15.25 b.6.1.1 22888 3duhA 314 15.42 b.1.1.4,b.1.2.1,b.1.2.1 157882,157883,157884 1f6fB 210 15.43 b.1.2.1,b.1.2.1 22033,22034 2nqcA 138 15.72 b.1.18.10 148344 2k7qA 191 16.24 2ux7A 122 16.38 1sfdA 105 16.91 b.6.1.1 105480 1ollA 188 17.55 b.1.1.4,b.1.1.4 93313,93314 3bevA 274 18.13 1fyhB 229 18.62 b.1.2.1,b.1.2.1 22055,22056 2brqA 97 18.72 b.1.18.10 129008 3kldA 384 19.08 1gl4B 98 19.15 b.1.1.4 65288 3erxA 123 19.87 3lndA 207 19.96 3clwA 507 20.71 1id2A 106 20.85 b.6.1.1 62288 1epfA 191 21.26 b.1.1.4,b.1.1.4 21694,21695 1gsmA 210 21.44 b.1.1.4,b.1.1.4 65535,65536 3lnhA 213 21.45 3di2B 223 21.88 3bfoA 91 23.03 1iuzA 98 23.14 b.6.1.1 22861 3f7rA 249 23.26 1y6kR 214 23.29 b.1.2.1,b.1.2.1 122663,122664 2va4A 192 23.33 2yz8A 103 23.63 1f97A 212 23.83 b.1.1.1,b.1.1.4 19763,21764 1wl7A 312 23.96 b.67.2.1 120996 3f7qA 234 24.35 1kdjA 102 24.78 b.6.1.1 22864 3kptA 355 25.11 1qg3A 195 25.67 b.1.2.1,b.1.2.1 21993,21994 2pz4A 239 26.40 2tbvA 387 26.95 b.121.4.7 23302 2durA 253 27.92 2a38A 194 28.21 2zahA 331 28.43 3b5hA 184 28.69 b.1.1.4,b.1.1.4 154838,154839 1a6zA 275 28.84 b.1.1.2,d.19.1.1 20781,38280 2wbxA 102 29.44 2ojhA 297 29.67 1sznA 417 30.58 b.71.1.1,c.1.8.1 106162,106163 1jxgA 100 30.63 b.6.1.1 67413 3e5zA 296 31.41 1waaA 93 32.35 2im5A 394 33.06 1lyqA 104 33.81 b.1.18.17 78302 2wg3C 463 33.98 1ag6A 99 34.85 b.6.1.1 22857 1cd9B 215 35.82 b.1.2.1,b.1.2.1 22041,22042 1hqlA 257 35.86 b.29.1.1 65907 2x2uA 246 36.23 2yxmA 100 37.18 2ch8A 201 37.99 1m2tB 263 39.47 b.42.2.1,b.42.2.1 84762,84763 1k2dB 189 39.75 b.1.1.2,d.19.1.1 84293,84294 2h26A 291 40.55 b.1.1.2,d.19.1.1 135990,135991 2k7pA 188 42.20 2z2nA 299 43.34 1t7vA 278 44.52 b.1.1.2,d.19.1.1 112302,112303 2jixB 225 45.80 b.1.2.1,b.1.2.1 148107,148108 1ofzA 312 46.61 b.68.8.1 86978 1q7fA 286 46.65 b.68.9.1 96036 1plcA 99 46.72 b.6.1.1 22846 2eigA 234 47.61 1rwhA 757 48.14 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1pbyB 337 49.02 b.69.2.2 94422 1ukgA 252 51.07 b.29.1.1 99489 3lniA 213 51.90 3iswA 99 52.96 3e6hA 275 53.76 1nepA 130 53.92 b.1.18.7 80440 3ecbA 277 54.51 2b5iC 199 55.51 b.1.2.1,b.1.2.1 127898,127899 1bypA 99 55.76 b.6.1.1 22858 1xh3A 276 55.81 b.1.1.2,d.19.1.1 115287,115288 1wwcA 118 55.86 b.1.1.4 21778 2cpcA 113 55.89 1d3cA 686 56.28 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 3dmmA 275 56.32 1axiB 236 56.80 b.1.2.1,b.1.2.1 21997,21998 2d3vA 196 57.34 2wklA 497 57.54 3bwaA 276 58.03 b.1.1.2,d.19.1.1 155683,155684 3k6fA 100 59.96 2h14A 317 60.80 1rxzA 245 61.06 d.131.1.2,d.131.1.2 98067,98068 1wlgA 299 61.44 b.152.1.1 114726 1a0rB 340 62.71 b.69.4.1 27658 1vemA 516 64.12 b.3.1.1,c.1.8.1 120021,120022 1v04A 355 64.16 b.68.6.2 100240 3k5rA 218 64.35 3acpA 417 64.38 1plc 99 65.44 2bc4A 211 65.49 3h55A 400 68.76 2gk3A 256 70.42 c.23.16.9 147123 2dbjA 124 70.96 2hb0A 369 71.82 2ww8A 893 72.43 1jk8B 190 72.87 b.1.1.2,d.19.1.1 63147,63148 2gu3A 136 74.15 d.17.1.6,d.17.1.6 147178,147179 3gnzP 213 74.37 2pltA 98 74.88 b.6.1.1 22862 3dhvA 512 75.96 2gc7A 386 77.61 b.69.2.1 134954 2htaA 309 78.63 3li5A 314 80.19 1a22B 238 80.30 b.1.2.1,b.1.2.1 22003,22004 3lneA 213 80.40 3c5mA 396 80.64 2fp8A 322 83.32 1pjxA 314 83.68 b.68.6.1 104167 1kdj 102 84.33 2blfA 373 84.59 2q0zX 339 84.74 a.289.1.1,b.1.18.22 149993,149994 2qc5A 300 85.86 2b5iB 214 86.44 b.1.2.1,b.1.2.1 127896,127897 1wwbX 103 87.05 b.1.1.4 21777 1he7A 126 87.73 b.1.1.4 60970 1qr4A 186 88.24 b.1.2.1,b.1.2.1 21986,21987 1q9rB 222 89.13 b.1.1.1,b.1.1.2 96307,96308 3iesA 551 89.52