# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l0qA 391 2.47e-08 b.1.3.1,b.69.2.3 77644,77645 2c4xA 260 5.34e-07 1b4rA 80 2.78e-05 b.1.3.1 22072 2e7mA 113 0.000965 2yrlA 102 0.002476 2wg4B 457 0.02764 1wgoA 123 0.1120 b.1.3.1 114618 1vcaA 202 0.2404 b.1.1.3,b.1.1.4 21649,21685 2o26U 290 0.4063 1hnfA 182 1.027 b.1.1.1,b.1.1.3 19741,21680 2v5mA 388 1.038 3ejjX 289 1.153 2kpnA 103 1.666 3jz7A 214 1.952 1cfb 205 2.096 2x10A 545 2.152 2ny1B 184 2.262 b.1.1.1,b.1.1.3 138764,138765 3lqaC 192 2.280 3bp5B 202 2.355 1uctA 218 2.688 b.1.1.4,b.1.1.4 88467,88468 3l5jA 288 2.838 3l5iA 290 3.113 2fcbA 173 3.177 b.1.1.4,b.1.1.4 21781,21782 1cwvA 492 3.188 b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 2x1wL 213 3.215 3grwA 241 3.245 2v5sA 394 3.680 2w1nA 238 3.683 2idqA 105 3.919 2yuzA 100 4.201 3bp6B 202 4.294 2petA 231 4.316 1rhfA 182 4.717 b.1.1.1,b.1.1.4 97469,97470 1cdyA 178 4.789 b.1.1.1,b.1.1.3 19719,21658 2wwkO 109 4.977 1pazA 123 4.996 b.6.1.1 22878 1cfbA 205 5.380 b.1.2.1,b.1.2.1 21991,21992 2wv3A 190 5.412 2oz4A 265 5.426 b.1.1.3,b.1.1.4,b.1.1.4 149099,149100,149101 3e0gA 483 5.873 1f2qA 176 5.877 b.1.1.4,b.1.1.4 21789,21790 1bqkA 124 6.232 b.6.1.1 22889 2ov0A 105 6.542 b.6.1.1 149033 2kkqA 116 6.733 1fhgA 154 6.865 b.1.1.4 21706 2ee9A 95 6.899 1fnlA 175 7.030 b.1.1.4,b.1.1.4 21783,21784 1cczA 171 7.054 b.1.1.1,b.1.1.3 19758,21683 2r15A 212 7.157 1py0A 125 7.423 b.6.1.1 111645 1itbB 315 7.452 b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 2dleA 104 7.633 2wp3O 109 7.699 3c7fA 487 7.990 2v44A 189 8.436 1bqsA 209 8.553 b.1.1.4,b.1.1.4 21704,21705 1cdy 178 8.753 1iamA 185 8.920 b.1.1.3,b.1.1.4 21653,21689 1zxqA 192 8.931 b.1.1.3,b.1.1.4 21657,21693 3l5hA 589 9.290 3knbA 100 9.518 2j8hA 197 9.574 2wp3T 102 9.723 3knbB 107 9.938 1qfhA 212 10.20 b.1.18.10,b.1.18.10 21893,21894 3f7pC 248 10.61 1zxq 192 10.67 2zr1B 267 10.68 3irgA 100 10.74 4pazA 123 10.76 b.6.1.1 22881 3cjjA 219 10.76 3ef4A 124 11.08 3d48R 211 11.16 b.1.2.1,b.1.2.1 157289,157290 2kdgA 100 11.38 2d7nA 93 11.52 b.1.18.10 131322 1u2hA 99 11.60 2illA 195 11.68 2fikA 287 12.18 b.1.1.2,d.19.1.1 133524,133525 2iepA 192 12.30 2rikA 284 12.50 3bn3B 196 13.13 3cafA 100 13.48 3irgB 107 13.96 2gbaA 105 14.57 1bqk 124 14.73 3darA 105 14.87 b.1.1.4 157466 2bk8A 97 15.16 1q55A 880 15.59 i.20.1.1 95862 1cs6A 382 15.62 b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21760,21761,21762,21763 1ugnA 198 16.68 b.1.1.4,b.1.1.4 107828,107829 2v9tA 117 17.26 3lnfA 213 17.71 2jllA 389 17.71 2w0pA 94 19.11 b.1.18.10 153738 3bevA 274 19.24 1g1cA 99 20.24 b.1.1.4 65078 2tbvA 387 21.36 b.121.4.7 23302 1ollA 188 21.87 b.1.1.4,b.1.1.4 93313,93314 1ev2E 220 23.13 b.1.1.4,b.1.1.4 21738,21739 1bxvA 91 23.28 b.6.1.1 22875 2ux7A 122 23.45 1sfdA 105 23.57 b.6.1.1 105480 3c12A 138 23.68 3lndA 207 23.71 1v05A 96 24.48 b.1.18.10 113465 1pmyA 123 25.87 b.6.1.1 22888 2dmcA 116 27.08 b.1.18.10 131572 3clwA 507 27.14 2wbxA 102 28.05 1f6fB 210 29.77 b.1.2.1,b.1.2.1 22033,22034 1gl4B 98 30.64 b.1.1.4 65288 1y6kR 214 32.16 b.1.2.1,b.1.2.1 122663,122664 2k7qA 191 32.21 1iuzA 98 32.69 b.6.1.1 22861 1kdjA 102 32.76 b.6.1.1 22864 2nqcA 138 33.49 b.1.18.10 148344 1id2A 106 33.79 b.6.1.1 62288 1fyhB 229 34.54 b.1.2.1,b.1.2.1 22055,22056 3e5zA 296 34.92 1t7vA 278 35.61 b.1.1.2,d.19.1.1 112302,112303 3f7qA 234 36.05 3lnhA 213 36.44 2ch8A 201 36.92 1jxgA 100 37.35 b.6.1.1 67413 3di2B 223 37.41 1sznA 417 38.00 b.71.1.1,c.1.8.1 106162,106163 1a6zA 275 38.20 b.1.1.2,d.19.1.1 20781,38280 2ojhA 297 38.23 3erxA 123 38.47 3duhA 314 38.47 b.1.1.4,b.1.2.1,b.1.2.1 157882,157883,157884 2im5A 394 38.94 2durA 253 40.89 1d3cA 686 41.00 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1f97A 212 41.01 b.1.1.1,b.1.1.4 19763,21764 1epfA 191 41.57 b.1.1.4,b.1.1.4 21694,21695 1qg3A 195 42.00 b.1.2.1,b.1.2.1 21993,21994 2h26A 291 42.63 b.1.1.2,d.19.1.1 135990,135991 2cpcA 113 43.05 1waaA 93 43.14 1n26A 325 43.59 b.1.1.4,b.1.2.1,b.1.2.1 79850,79851,79852 2x2uA 246 44.65 2yxmA 100 44.67 1wlgA 299 45.53 b.152.1.1 114726 3kptA 355 46.17 2zahA 331 46.21 1lyqA 104 46.23 b.1.18.17 78302 2brqA 97 46.42 b.1.18.10 129008 2yz8A 103 49.35 3f7rA 249 51.62 1k2dB 189 52.28 b.1.1.2,d.19.1.1 84293,84294 1pbyB 337 52.55 b.69.2.2 94422 1gsmA 210 53.32 b.1.1.4,b.1.1.4 65535,65536 3dmmA 275 53.85 3bfoA 91 54.12 2hqsA 415 54.48 b.68.4.1,c.51.2.1 136662,136663 3lniA 213 54.57 2pz4A 239 54.72 1wl7A 312 55.46 b.67.2.1 120996 1ag6A 99 56.10 b.6.1.1 22857 2fp8A 322 56.32 1cd9B 215 56.35 b.1.2.1,b.1.2.1 22041,22042 3k6fA 100 57.89 2d3vA 196 58.38 3ecbA 277 59.79 2bc4A 211 60.43 1m2tB 263 61.86 b.42.2.1,b.42.2.1 84762,84763 3b5hA 184 64.34 b.1.1.4,b.1.1.4 154838,154839 3e6hA 275 65.69 1rxzA 245 66.60 d.131.1.2,d.131.1.2 98067,98068 1hqlA 257 67.84 b.29.1.1 65907 3h55A 400 69.73 1bypA 99 69.87 b.6.1.1 22858 1xh3A 276 70.47 b.1.1.2,d.19.1.1 115287,115288 2wklA 497 71.85 2va4A 192 72.22 2h14A 317 72.26 3bwaA 276 72.29 b.1.1.2,d.19.1.1 155683,155684 1ukgA 252 72.86 b.29.1.1 99489 2jixB 225 73.08 b.1.2.1,b.1.2.1 148107,148108 1nexB 464 73.11 a.158.1.1,b.69.4.1 80443,80444 1v04A 355 73.35 b.68.6.2 100240 1ofzA 312 74.05 b.68.8.1 86978 1rwhA 757 74.58 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1a0rB 340 75.58 b.69.4.1 27658 2gk3A 256 76.41 c.23.16.9 147123 2eigA 234 77.22 2a38A 194 77.60 1axiB 236 78.75 b.1.2.1,b.1.2.1 21997,21998 1q7fA 286 80.18 b.68.9.1 96036 1jk8B 190 83.00 b.1.1.2,d.19.1.1 63147,63148 2gu3A 136 84.33 d.17.1.6,d.17.1.6 147178,147179 2z2nA 299 84.84 2gc7A 386 85.13 b.69.2.1 134954 3kldA 384 85.37 2blfA 373 85.57 1ledA 243 85.79 b.29.1.1 24039 1q9rB 222 87.36 b.1.1.1,b.1.1.2 96307,96308 1plcA 99 87.39 b.6.1.1 22846 3h8nA 195 87.47 2ffuA 501 88.08 2x41A 721 88.43 2wg3C 463 88.47 3h9yA 223 89.46 1a22B 238 89.48 b.1.2.1,b.1.2.1 22003,22004 2k7pA 188 89.62