# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l0qA 391 1.57e-08 b.1.3.1,b.69.2.3 77644,77645 2c4xA 260 1.34e-07 1b4rA 80 1.14e-05 b.1.3.1 22072 2e7mA 113 0.000241 2yrlA 102 0.000290 1wgoA 123 0.06275 b.1.3.1 114618 2wg4B 457 0.3522 1vcaA 202 0.5648 b.1.1.3,b.1.1.4 21649,21685 1cfb 205 0.7409 2w1nA 238 0.7578 2kpnA 103 0.9092 2o26U 290 1.032 3l5jA 288 1.347 1hnfA 182 1.358 b.1.1.1,b.1.1.3 19741,21680 3ejjX 289 1.406 1cfbA 205 1.972 b.1.2.1,b.1.2.1 21991,21992 3jz7A 214 2.070 2x10A 545 2.100 1cwvA 492 2.381 b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 2ee9A 95 2.539 2fcbA 173 2.590 b.1.1.4,b.1.1.4 21781,21782 3e0gA 483 2.704 3lqaC 192 3.009 2dleA 104 3.699 2oz4A 265 3.852 b.1.1.3,b.1.1.4,b.1.1.4 149099,149100,149101 3bp5B 202 3.985 3l5iA 290 4.076 2ny1B 184 4.874 b.1.1.1,b.1.1.3 138764,138765 1fhgA 154 4.896 b.1.1.4 21706 3bp6B 202 5.149 2kkqA 116 5.258 2yuzA 100 5.897 3l5hA 589 5.932 2wwkO 109 6.060 1rhfA 182 6.108 b.1.1.1,b.1.1.4 97469,97470 3f7pC 248 6.286 1y6kR 214 6.458 b.1.2.1,b.1.2.1 122663,122664 2r15A 212 6.513 1cczA 171 6.994 b.1.1.1,b.1.1.3 19758,21683 1kdjA 102 7.106 b.6.1.1 22864 1cdyA 178 7.243 b.1.1.1,b.1.1.3 19719,21658 2bk8A 97 7.277 1fnlA 175 7.861 b.1.1.4,b.1.1.4 21783,21784 3cjjA 219 8.287 2v5mA 388 8.398 3d48R 211 8.953 b.1.2.1,b.1.2.1 157289,157290 1q55A 880 9.022 i.20.1.1 95862 2fikA 287 9.037 b.1.1.2,d.19.1.1 133524,133525 1bxvA 91 9.191 b.6.1.1 22875 3c12A 138 9.941 2w0pA 94 10.62 b.1.18.10 153738 2idqA 105 10.94 1n26A 325 11.04 b.1.1.4,b.1.2.1,b.1.2.1 79850,79851,79852 2wp3O 109 11.54 1iuzA 98 12.15 b.6.1.1 22861 1pazA 123 12.18 b.6.1.1 22878 3grwA 241 12.71 1a6zA 275 12.82 b.1.1.2,d.19.1.1 20781,38280 2petA 231 13.25 1f2qA 176 13.44 b.1.1.4,b.1.1.4 21789,21790 3knbA 100 14.28 2kdgA 100 14.62 2jllA 389 14.92 3irgA 100 15.52 1iamA 185 15.73 b.1.1.3,b.1.1.4 21653,21689 1f6fB 210 16.31 b.1.2.1,b.1.2.1 22033,22034 1jxgA 100 16.64 b.6.1.1 67413 3bn3B 196 16.83 2ov0A 105 16.85 b.6.1.1 149033 1lyqA 104 17.04 b.1.18.17 78302 1bqsA 209 17.05 b.1.1.4,b.1.1.4 21704,21705 2wbxA 102 17.16 1gl4B 98 17.16 b.1.1.4 65288 2wp3T 102 17.33 1jk8B 190 17.39 b.1.1.2,d.19.1.1 63147,63148 2d7nA 93 17.44 b.1.18.10 131322 3bevA 274 17.75 2dbjA 124 18.10 1uctA 218 18.17 b.1.1.4,b.1.1.4 88467,88468 1qg3A 195 18.52 b.1.2.1,b.1.2.1 21993,21994 2rikA 284 18.62 1ag6A 99 19.15 b.6.1.1 22857 1bqkA 124 19.19 b.6.1.1 22889 4pazA 123 19.28 b.6.1.1 22881 1fyhB 229 19.67 b.1.2.1,b.1.2.1 22055,22056 2wv3A 190 19.76 1plcA 99 19.84 b.6.1.1 22846 1k2dB 189 20.11 b.1.1.2,d.19.1.1 84293,84294 1v05A 96 20.23 b.1.18.10 113465 2nqcA 138 20.41 b.1.18.10 148344 3knbB 107 20.65 2gbaA 105 20.71 2v5sA 394 21.42 3lnhA 213 21.53 3k5rA 218 22.27 2iepA 192 23.39 2dmcA 116 23.45 b.1.18.10 131572 1kdj 102 23.62 2zr1B 267 24.27 1itbB 315 24.63 b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 2gysA 419 25.43 b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1 135865,135866,135867,135868 2brqA 97 25.91 b.1.18.10 129008 2v9tA 117 26.31 2im5A 394 26.51 1cd9B 215 26.83 b.1.2.1,b.1.2.1 22041,22042 3irgB 107 27.48 3f7qA 234 27.85 1hdmB 193 28.36 b.1.1.2,d.19.1.1 21584,38158 3c5jB 190 28.98 1zxqA 192 29.02 b.1.1.3,b.1.1.4 21657,21693 1py0A 125 29.83 b.6.1.1 111645 2v44A 189 30.39 2k7qA 191 30.59 1wisA 124 31.41 b.1.2.1 120975 3d1mC 102 31.77 3kptA 355 31.87 1xh3A 276 33.78 b.1.1.2,d.19.1.1 115287,115288 2ux7A 122 35.18 2pltA 98 35.76 b.6.1.1 22862 1iakB 185 35.77 b.1.1.2,d.19.1.1 21626,38200 1uvqB 198 37.26 b.1.1.2,d.19.1.1 100064,100065 2a38A 194 37.98 2x1wL 213 38.11 1sznA 417 40.04 b.71.1.1,c.1.8.1 106162,106163 2pz4A 239 40.49 1plc 99 40.51 2h26A 291 40.95 b.1.1.2,d.19.1.1 135990,135991 2jixB 225 41.01 b.1.2.1,b.1.2.1 148107,148108 1bqk 124 41.73 1bypA 99 42.45 b.6.1.1 22858 1u2hA 99 42.79 3lndA 207 43.20 1qr4A 186 43.43 b.1.2.1,b.1.2.1 21986,21987 3k6fA 100 43.43 1qfhA 212 43.48 b.1.18.10,b.1.18.10 21893,21894 1zxq 192 44.68 1pmyA 123 45.81 b.6.1.1 22888 3k1wA 341 45.84 1cdy 178 46.27 2ww8A 893 46.75 3dmmA 275 48.52 3lnfA 213 49.40 3h9yA 223 49.47 1ieaB 228 49.56 b.1.1.2,d.19.1.1 21632,38206 1t7vA 278 51.72 b.1.1.2,d.19.1.1 112302,112303 3f7rA 249 51.84 3ef4A 124 52.50 2yz8A 103 52.66 2b5iC 199 55.54 b.1.2.1,b.1.2.1 127898,127899 1nepA 130 56.52 b.1.18.7 80440 3ecbA 277 58.03 3dtdA 175 58.05 2j8hA 197 58.14 1sfdA 105 58.40 b.6.1.1 105480 1m9lA 199 58.62 c.10.3.1 84903 3di2B 223 59.53 2bc4B 211 60.39 3bfoA 91 60.85 1wwcA 118 61.10 b.1.1.4 21778 1ev2E 220 61.13 b.1.1.4,b.1.1.4 21738,21739 1id2A 106 61.18 b.6.1.1 62288 1gsmA 210 62.09 b.1.1.4,b.1.1.4 65535,65536 3bwaA 276 64.50 b.1.1.2,d.19.1.1 155683,155684 3duhA 314 65.31 b.1.1.4,b.1.2.1,b.1.2.1 157882,157883,157884 3g6zA 341 65.43 1je6A 275 65.47 b.1.1.2,d.19.1.1 71638,71639 2cpcA 113 66.36 3clwA 507 68.43 1d3cA 686 70.02 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1g1cA 99 70.19 b.1.1.4 65078 1iakA 199 70.70 b.1.1.2,d.19.1.1 21625,38199 2dtqA 223 71.09 b.1.1.2,b.1.1.2 131725,131726 1f97A 212 74.20 b.1.1.1,b.1.1.4 19763,21764 1wlgA 299 74.21 b.152.1.1 114726 3fnsA 332 74.32 3b5hA 184 77.57 b.1.1.4,b.1.1.4 154838,154839 2illA 195 77.89 1fngA 192 78.11 b.1.1.2,d.19.1.1 59904,59905 1fv1B 190 78.29 b.1.1.2,d.19.1.1 21606,38180 3iswA 99 78.80 1pm4A 119 79.49 b.135.1.1 94891 1wl7A 312 81.48 b.67.2.1 120996 1bxoA 323 81.50 b.50.1.2 26805 3e5zA 296 82.97 3darA 105 84.50 b.1.1.4 157466 2j6gA 266 86.95 1ofzA 312 87.31 b.68.8.1 86978 3l6fB 193 88.18 1ugnA 198 88.21 b.1.1.4,b.1.1.4 107828,107829 3klqA 141 88.26 2q0zX 339 89.05 a.289.1.1,b.1.18.22 149993,149994 2gimA 106 89.44 b.6.1.1 135244