# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l0qA 391 1.57e-07 b.1.3.1,b.69.2.3 77644,77645 2c4xA 260 7.82e-07 1b4rA 80 8.35e-05 b.1.3.1 22072 2e7mA 113 0.001848 2yrlA 102 0.002766 1wgoA 123 0.3122 b.1.3.1 114618 1cfb 205 0.8491 2w1nA 238 1.658 1cfbA 205 1.688 b.1.2.1,b.1.2.1 21991,21992 2v5mA 388 2.046 2fcbA 173 2.325 b.1.1.4,b.1.1.4 21781,21782 3l5jA 288 2.407 1vcaA 202 2.801 b.1.1.3,b.1.1.4 21649,21685 2kpnA 103 3.044 2o26U 290 3.142 3l5iA 290 3.353 2jllA 389 3.423 2ny1B 184 4.216 b.1.1.1,b.1.1.3 138764,138765 1f2qA 176 4.291 b.1.1.4,b.1.1.4 21789,21790 3lqaC 192 4.497 3duhA 314 4.625 b.1.1.4,b.1.2.1,b.1.2.1 157882,157883,157884 3grwA 241 4.810 1n26A 325 4.860 b.1.1.4,b.1.2.1,b.1.2.1 79850,79851,79852 3d48R 211 4.927 b.1.2.1,b.1.2.1 157289,157290 3f7pC 248 5.040 3e0gA 483 5.176 2x10A 545 5.296 3bp6B 202 5.341 1cwvA 492 5.420 b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 2wg4B 457 5.434 3jz7A 214 5.625 1uctA 218 5.696 b.1.1.4,b.1.1.4 88467,88468 3ejjX 289 5.797 1fnlA 175 6.340 b.1.1.4,b.1.1.4 21783,21784 1hnfA 182 6.457 b.1.1.1,b.1.1.3 19741,21680 2dleA 104 6.783 3l5hA 589 7.070 2r15A 212 7.213 2v5sA 394 7.694 1q55A 880 7.916 i.20.1.1 95862 1itbB 315 7.921 b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 1zxqA 192 10.33 b.1.1.3,b.1.1.4 21657,21693 2ojhA 297 11.14 2ee9A 95 11.29 3bp5B 202 12.03 3f7qA 234 12.43 2d7nA 93 12.50 b.1.18.10 131322 2wwkO 109 12.54 1f6fB 210 13.11 b.1.2.1,b.1.2.1 22033,22034 1cd9B 215 13.43 b.1.2.1,b.1.2.1 22041,22042 2idqA 105 14.10 1qg3A 195 15.10 b.1.2.1,b.1.2.1 21993,21994 1ev2E 220 15.11 b.1.1.4,b.1.1.4 21738,21739 1v05A 96 15.78 b.1.18.10 113465 2v44A 189 16.11 2oz4A 265 16.24 b.1.1.3,b.1.1.4,b.1.1.4 149099,149100,149101 2kkqA 116 16.92 1bqsA 209 17.39 b.1.1.4,b.1.1.4 21704,21705 1cdyA 178 17.51 b.1.1.1,b.1.1.3 19719,21658 3cjjA 219 18.57 3c12A 138 18.58 1fyhB 229 18.82 b.1.2.1,b.1.2.1 22055,22056 1y6kR 214 19.07 b.1.2.1,b.1.2.1 122663,122664 1rhfA 182 19.11 b.1.1.1,b.1.1.4 97469,97470 1fhgA 154 19.50 b.1.1.4 21706 2x1wL 213 19.53 2ov0A 105 20.64 b.6.1.1 149033 2wp3O 109 20.72 2jixB 225 20.87 b.1.2.1,b.1.2.1 148107,148108 2w0pA 94 21.26 b.1.18.10 153738 1cdy 178 21.39 2j8hA 197 21.83 1gl4B 98 21.86 b.1.1.4 65288 1iamA 185 22.19 b.1.1.3,b.1.1.4 21653,21689 3f7rA 249 22.20 3di2B 223 22.70 2blfA 373 22.99 3knbB 107 23.39 2b5iC 199 23.54 b.1.2.1,b.1.2.1 127898,127899 2nqcA 138 23.65 b.1.18.10 148344 3bn3B 196 23.67 2illA 195 25.26 2zr1B 267 25.31 1bqkA 124 26.12 b.6.1.1 22889 2fikA 287 26.48 b.1.1.2,d.19.1.1 133524,133525 3clwA 507 27.20 2wp3T 102 27.35 2bk8A 97 27.36 3irgA 100 27.44 1cczA 171 27.55 b.1.1.1,b.1.1.3 19758,21683 1u2hA 99 28.29 1eerB 227 28.56 b.1.2.1,b.1.2.1 22011,22012 3knbA 100 28.57 3irgB 107 29.03 2x41A 721 29.05 2dmcA 116 29.63 b.1.18.10 131572 3lnfA 213 30.18 2a38A 194 30.19 2petA 231 30.94 2b5iB 214 31.94 b.1.2.1,b.1.2.1 127896,127897 1bqk 124 32.37 2q0zX 339 33.11 a.289.1.1,b.1.18.22 149993,149994 3c7fA 487 33.44 1zxq 192 34.75 1pazA 123 35.20 b.6.1.1 22878 2gysA 419 35.41 b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1 135865,135866,135867,135868 2wbxA 102 35.83 2hqsA 415 36.41 b.68.4.1,c.51.2.1 136662,136663 1a22B 238 36.65 b.1.2.1,b.1.2.1 22003,22004 3lndA 207 36.83 2yuzA 100 37.29 2cdpA 160 37.32 2brqA 97 37.70 b.1.18.10 129008 3k5rA 218 37.72 3cafA 100 37.90 2kdgA 100 40.03 3d1mC 102 40.42 3bevA 274 40.96 1lyqA 104 41.09 b.1.18.17 78302 3e5zA 296 41.15 2ux7A 122 41.50 3bpoC 314 41.61 1bxvA 91 41.69 b.6.1.1 22875 2q7nA 488 42.24 1f97A 212 42.48 b.1.1.1,b.1.1.4 19763,21764 2iepA 192 43.08 1axiB 236 43.70 b.1.2.1,b.1.2.1 21997,21998 2gbaA 105 45.39 1w3fA 315 45.88 3lnhA 213 47.45 2yz8A 103 48.02 2x42A 721 49.57 1a6zA 275 50.12 b.1.1.2,d.19.1.1 20781,38280 1pmyA 123 50.96 b.6.1.1 22888 3darA 105 51.16 b.1.1.4 157466 2pz4A 239 51.68 2rikA 284 51.72 3ef4A 124 51.91 3k6fA 100 53.24 2wv3A 190 53.50 2k7qA 191 54.39 1g1cA 99 56.08 b.1.1.4 65078 4pazA 123 57.30 b.6.1.1 22881 2gu3A 136 57.37 d.17.1.6,d.17.1.6 147178,147179 3lqmA 201 58.61 1gsmA 210 59.09 b.1.1.4,b.1.1.4 65535,65536 1id2A 106 60.33 b.6.1.1 62288 2k7pA 188 61.05 1py0A 125 61.51 b.6.1.1 111645 3hxjA 330 61.93 3cpnA 330 62.25 3n1fC 102 62.48 1sfdA 105 62.77 b.6.1.1 105480 3acpA 417 63.18 2x2uA 246 63.28 2aanA 139 63.74 1qfhA 212 67.15 b.1.18.10,b.1.18.10 21893,21894 2durA 253 67.31 1qr4A 186 67.62 b.1.2.1,b.1.2.1 21986,21987 1m2tB 263 67.93 b.42.2.1,b.42.2.1 84762,84763 1kdjA 102 68.29 b.6.1.1 22864 1t7vA 278 69.72 b.1.1.2,d.19.1.1 112302,112303 2dbjA 124 70.18 2j04B 524 70.53 1epfA 191 72.62 b.1.1.4,b.1.1.4 21694,21695 1wl7A 312 73.16 b.67.2.1 120996 1rxzA 245 74.42 d.131.1.2,d.131.1.2 98067,98068 2bfgA 503 76.44 b.71.1.2,c.1.8.3 128423,128424 2geeA 203 76.78 1tmxA 293 77.01 3bfoA 91 77.04 1ugnA 198 77.79 b.1.1.4,b.1.1.4 107828,107829 1ollA 188 79.78 b.1.1.4,b.1.1.4 93313,93314 1ju3A 583 80.53 b.18.1.13,c.69.1.21 67300,67301 3d85D 306 80.89 b.1.1.4,b.1.2.1,b.1.2.1 157439,157440,157441 2h14A 317 81.50 1pz4A 116 81.72 d.106.1.1 95400 3dtdA 175 82.01 1a0rB 340 82.85 b.69.4.1 27658 2c9qA 102 83.06 b.1.18.17 130138 3lniA 213 83.25 1ri6A 343 83.59 b.69.11.1 97503 1vqqA 646 85.15 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 1bquA 215 85.54 b.1.2.1,b.1.2.1 22066,22067 1hqlA 257 87.72 b.29.1.1 65907 1jxgA 100 87.85 b.6.1.1 67413 1crzA 403 89.03 b.68.4.1,c.51.2.1 27629,33211