# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l0qA 391 2.58e-05 b.1.3.1,b.69.2.3 77644,77645 2c4xA 260 0.001062 1b4rA 80 0.004612 b.1.3.1 22072 2yrlA 102 0.8989 1wgoA 123 1.485 b.1.3.1 114618 3i6sA 649 1.593 2e7mA 113 2.818 1pbyB 337 3.312 b.69.2.2 94422 2ny1B 184 3.458 b.1.1.1,b.1.1.3 138764,138765 1z2wA 192 4.873 d.159.1.7 124390 3dsmA 328 6.761 2fcbA 173 8.080 b.1.1.4,b.1.1.4 21781,21782 1cs6A 382 8.797 b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21760,21761,21762,21763 3ejjX 289 9.025 2hyxA 352 9.613 2bvyA 475 9.709 b.1.18.2,c.1.8.3 129301,129302 1hnfA 182 12.38 b.1.1.1,b.1.1.3 19741,21680 2blfA 373 15.15 2x2uA 246 15.52 3bfoA 91 16.54 1f2qA 176 16.67 b.1.1.4,b.1.1.4 21789,21790 2x10A 545 19.21 1fhgA 154 19.24 b.1.1.4 21706 2v5mA 388 20.07 1vpsA 289 20.53 b.121.6.1 23336 2x42A 721 20.82 2wp3T 102 21.11 3knbA 100 21.12 2o26U 290 21.83 1g1cA 99 23.14 b.1.1.4 65078 3lndA 207 23.87 2wbxA 102 23.87 3grwA 241 24.24 2kdgA 100 24.66 2x41A 721 24.98 3kvnA 632 25.05 3irgA 100 25.25 1w24A 182 25.43 d.159.1.7 120579 2r15A 212 25.65 1h8lA 380 25.93 b.3.2.1,c.56.5.1 65737,65738 2kkqA 116 26.02 3cafA 100 26.28 2nsmA 439 26.48 2kpnA 103 27.04 2bibA 547 27.21 b.109.1.1,d.157.1.8 128581,128582 2jllA 389 27.25 2a38A 194 27.44 3emhA 318 27.47 2bfgA 503 29.20 b.71.1.2,c.1.8.3 128423,128424 1lyqA 104 29.42 b.1.18.17 78302 2wwkO 109 29.84 1ej6A 1289 30.61 i.7.1.1 45967 1ev2E 220 30.69 b.1.1.4,b.1.1.4 21738,21739 2v5sA 394 30.73 3darA 105 31.86 b.1.1.4 157466 1cidA 177 32.06 b.1.1.1,b.1.1.3 19740,21679 1fyhB 229 32.36 b.1.2.1,b.1.2.1 22055,22056 1pmi 440 33.31 1qa9A 102 33.77 b.1.1.1 19742 1fnyA 237 33.94 b.29.1.1 59920 1nexB 464 34.13 a.158.1.1,b.69.4.1 80443,80444 2bs9A 503 36.81 b.71.1.2,c.1.8.3 129062,129063 3b3fA 341 37.29 1or8A 340 37.76 c.66.1.6 93451 1a22B 238 38.12 b.1.2.1,b.1.2.1 22003,22004 1bqsA 209 38.47 b.1.1.4,b.1.1.4 21704,21705 1p22A 435 40.25 a.158.1.1,b.69.4.1 87715,87716 3lnfA 213 41.14 2w91A 653 41.35 2rb8A 104 42.37 2ovrB 445 43.54 a.158.1.1,b.69.4.1 145735,145736 1jv2A 957 43.82 b.1.15.1,b.1.15.1,b.1.15.1,b.69.8.1 67334,67335,67336,67337 3kldA 384 43.89 1lmeA 176 44.96 d.167.1.1 84629 3knbB 107 45.44 2h14A 317 45.55 1uctA 218 46.57 b.1.1.4,b.1.1.4 88467,88468 3hjrA 600 47.84 2a22A 215 48.03 d.159.1.7 126025 3lngA 215 48.70 1ws0A 156 49.54 1gl4B 98 49.69 b.1.1.4 65288 3bevA 274 49.80 2v9tA 117 50.40 1bu8A 452 51.20 b.12.1.2,c.69.1.19 23647,34795 1itbB 315 51.85 b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 2v05A 311 52.32 2avwA 311 52.38 1pmiA 440 52.78 b.82.1.3 28114 2ov9A 216 52.86 d.38.1.5 149034 1u2hA 99 53.55 3c3vA 510 54.70 2omzB 105 54.91 b.1.6.1 148890 3fz3A 531 55.30 2bk8A 97 55.72 2va4A 192 56.03 3jz7A 214 56.50 1o6sB 105 57.03 b.1.6.1 81096 1gxrA 337 58.18 b.69.4.1 70722 2vv6A 119 58.40 3h1wA 393 58.48 3lnhA 213 59.42 2wp3O 109 59.58 3gzaA 443 60.42 3k6fA 100 60.81 1olzA 663 61.23 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 1hq0A 295 61.66 d.194.1.1 61122 3lneA 213 62.74 3irgB 107 63.11 2ew5A 181 63.32 1tyeB 440 63.45 b.1.15.1,c.62.1.1,g.16.2.1 112830,112831,112832 1lpbB 449 64.55 b.12.1.2,c.69.1.19 23643,34791 1waaA 93 64.70 1t17A 148 65.38 d.129.3.6 112215 3eypA 469 65.49 1w99A 558 65.71 3gbeA 558 66.76 3lk41 286 67.38 1d3cA 686 68.24 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1xj4A 119 68.61 d.110.3.2 122027 2pzhA 135 69.06 2v74B 346 70.72 1vcaA 202 70.85 b.1.1.3,b.1.1.4 21649,21685 2fauA 341 71.04 2wvvA 450 71.33 2o5uA 148 72.18 d.38.1.1 148616 1t7vA 278 74.22 b.1.1.2,d.19.1.1 112302,112303 1g87A 614 74.97 a.102.1.2,b.2.2.2 83275,83276 2qsqA 111 76.58 1nrfA 262 77.82 e.3.1.1 92086 1qw9A 502 77.93 b.71.1.2,c.1.8.3 96466,96467 3ir3A 148 79.40 3iylW 1299 79.58 1v3yA 192 79.91 d.167.1.1 113508 1p7hL 286 80.01 b.1.18.1,b.2.5.3 94271,94272 3k6iA 99 83.63 3gxpA 398 83.86 1ti6B 274 84.45 b.3.5.1,d.58.1.5 106976,106977 2pz4A 239 84.52 2b3yA 888 84.68 c.8.2.1,c.83.1.1 127803,127804 3e8pA 164 85.52 1i5pA 633 86.69 b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 1axiB 236 87.37 b.1.2.1,b.1.2.1 21997,21998 2gnqA 336 87.93 1w3fA 315 89.03 1ten 90 89.54 2df7A 458 89.55 b.121.4.9 131449