# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2c4xA 260 2.71e-10 1l0qA 391 5.58e-09 b.1.3.1,b.69.2.3 77644,77645 1oflA 481 4.38e-08 b.80.1.4 103934 1b4rA 80 7.59e-05 b.1.3.1 22072 2e7mA 113 0.000201 2yrlA 102 0.003722 1wgoA 123 0.04927 b.1.3.1 114618 1dboA 506 0.3710 b.80.1.4 28034 1hnf 182 0.4982 1ugnA 198 0.5151 b.1.1.4,b.1.1.4 107828,107829 1nkrA 201 0.7213 b.1.1.4,b.1.1.4 21799,21800 3h8nA 195 0.8127 2b5iC 199 1.130 b.1.2.1,b.1.2.1 127898,127899 1hnfA 182 1.199 b.1.1.1,b.1.1.3 19741,21680 1uctA 218 1.426 b.1.1.4,b.1.1.4 88467,88468 1ollA 188 1.815 b.1.1.4,b.1.1.4 93313,93314 1cdyA 178 1.821 b.1.1.1,b.1.1.3 19719,21658 3d48R 211 1.845 b.1.2.1,b.1.2.1 157289,157290 3lqaC 192 2.032 3l5jA 288 2.100 3ejjX 289 2.257 1f6fB 210 2.257 b.1.2.1,b.1.2.1 22033,22034 2o26U 290 2.359 2kpnA 103 2.369 2geeA 203 2.398 1cczA 171 2.416 b.1.1.1,b.1.1.3 19758,21683 1kb0A 677 2.497 a.3.1.6,b.70.1.1 68378,68379 1g0xA 197 2.565 b.1.1.4,b.1.1.4 21805,21806 2w1nA 238 2.610 3lqmA 201 2.798 3e0gA 483 3.306 2oz4A 265 4.115 b.1.1.3,b.1.1.4,b.1.1.4 149099,149100,149101 3l5iA 290 4.147 3bp6B 202 4.326 2v5mA 388 4.468 1nkr 201 4.590 1cfb 205 4.787 3bp5B 202 5.373 1qr4A 186 5.459 b.1.2.1,b.1.2.1 21986,21987 1fnlA 175 5.775 b.1.1.4,b.1.1.4 21783,21784 1wit 93 5.856 1bquA 215 6.109 b.1.2.1,b.1.2.1 22066,22067 2x41A 721 6.150 3l5hA 589 6.226 2d3vA 196 6.289 1y6kR 214 7.076 b.1.2.1,b.1.2.1 122663,122664 1cwvA 492 7.397 b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 3cjjA 219 7.767 2ny1B 184 7.782 b.1.1.1,b.1.1.3 138764,138765 2x42A 721 8.706 2idqA 105 9.746 2x1wL 213 9.907 2fcbA 173 10.11 b.1.1.4,b.1.1.4 21781,21782 2ov0A 105 10.29 b.6.1.1 149033 2v5sA 394 10.38 1id2A 106 10.69 b.6.1.1 62288 1yr2A 741 10.98 1bqk 124 11.22 3f7rA 249 11.58 3grwA 241 11.62 1qg3A 195 11.76 b.1.2.1,b.1.2.1 21993,21994 2v44A 189 12.74 1dbgA 506 12.91 b.80.1.4 28033 3gleA 295 12.91 2zahA 331 12.99 1fhgA 154 13.03 b.1.1.4 21706 1cd9B 215 13.21 b.1.2.1,b.1.2.1 22041,22042 2x2uA 246 13.67 1a22B 238 13.96 b.1.2.1,b.1.2.1 22003,22004 3kldA 384 14.18 1gyhA 318 14.86 b.67.2.1 70757 3fvzA 329 14.95 1rhfA 182 17.80 b.1.1.1,b.1.1.4 97469,97470 2iepA 192 18.12 2x10A 545 18.65 1bqkA 124 18.69 b.6.1.1 22889 2illA 195 18.96 1f42A 306 19.22 b.1.1.4,b.1.2.1,b.1.2.1 59636,59637,59638 2ux7A 122 19.54 1cs6A 382 19.70 b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21760,21761,21762,21763 1fyhB 229 21.24 b.1.2.1,b.1.2.1 22055,22056 3f7qA 234 22.29 2wp3O 109 22.66 2d7nA 93 22.81 b.1.18.10 131322 3hhrB 203 22.83 b.1.2.1,b.1.2.1 22005,22006 1eerB 227 23.34 b.1.2.1,b.1.2.1 22011,22012 2wwkO 109 23.55 2j8hA 197 24.00 1lyqA 104 25.17 b.1.18.17 78302 2jllA 389 25.56 1iarB 207 26.81 b.1.2.1,b.1.2.1 22037,22038 2j6gA 266 26.95 3jz7A 214 27.22 2wp3T 102 27.66 1vemA 516 27.86 b.3.1.1,c.1.8.1 120021,120022 4pazA 123 28.49 b.6.1.1 22881 1pmyA 123 29.02 b.6.1.1 22888 2tbvA 387 30.08 b.121.4.7 23302 2ee9A 95 30.66 3erxA 123 30.85 3bfoA 91 31.36 2k7pA 188 32.11 1cfbA 205 34.95 b.1.2.1,b.1.2.1 21991,21992 1f00I 282 35.04 b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 1g1cA 99 35.10 b.1.1.4 65078 3knbA 100 35.72 1qa9A 102 35.93 b.1.1.1 19742 3kolA 156 37.86 1sfdA 105 39.26 b.6.1.1 105480 2ww8A 893 40.17 2gu3A 136 40.45 d.17.1.6,d.17.1.6 147178,147179 2prvA 153 40.55 d.369.1.1 149817 1z6jT 211 40.59 b.1.2.1,b.1.2.1 124527,124528 1gsmA 210 41.39 b.1.1.4,b.1.1.4 65535,65536 1w2tA 432 41.44 b.29.1.19,b.67.2.3 120607,120608 2zr1B 267 41.69 3gl3A 152 41.85 3hdcA 158 43.67 1pazA 123 44.10 b.6.1.1 22878 3fgbA 361 45.56 2q7nA 488 46.08 2b5iB 214 46.66 b.1.2.1,b.1.2.1 127896,127897 1qksA 567 47.16 a.3.1.2,b.70.2.1 15951,27710 3irgA 100 47.26 2pz4A 239 47.62 3b5hA 184 47.62 b.1.1.4,b.1.1.4 154838,154839 3di2B 223 48.75 1opoA 348 48.89 b.121.4.7 87240 2k7qA 191 48.94 2jixB 225 49.04 b.1.2.1,b.1.2.1 148107,148108 3knbB 107 50.04 1u2hA 99 51.76 1py0A 125 52.05 b.6.1.1 111645 1iuzA 98 55.84 b.6.1.1 22861 1bqsA 209 56.48 b.1.1.4,b.1.1.4 21704,21705 3irgB 107 57.13 1epfA 191 57.35 b.1.1.4,b.1.1.4 21694,21695 1juhA 350 58.07 b.82.1.5 71884 1ziwA 680 58.11 2dmcA 116 58.72 b.1.18.10 131572 1aac 105 59.01 1tlk 154 59.10 1cidA 177 61.47 b.1.1.1,b.1.1.3 19740,21679 1wwcA 118 61.86 b.1.1.4 21778 3c12A 138 63.07 3f7pC 248 63.25 2f9sA 151 64.39 c.47.1.10 133168 1edqA 540 65.09 b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1bxvA 91 66.15 b.6.1.1 22875 2brqA 97 66.45 b.1.18.10 129008 2w0pA 94 66.57 b.1.18.10 153738 1cqyA 99 66.59 b.3.1.1 22527 1x82A 190 69.37 b.82.1.7 114955 2dg1A 333 69.58 b.68.6.1 131493 3c2uA 538 71.67 2v9tA 117 72.34 1orvA 728 72.38 b.70.3.1,c.69.1.24 87354,87355 3dsgA 99 72.96 2qc5A 300 78.51 1h2wA 710 78.62 b.69.7.1,c.69.1.4 76596,76597 3duhA 314 79.03 b.1.1.4,b.1.2.1,b.1.2.1 157882,157883,157884 3k5rA 218 79.05 2gk3A 256 79.11 c.23.16.9 147123 2a38A 194 82.71 3lniA 213 83.01 1v05A 96 85.72 b.1.18.10 113465 2aanA 139 86.41 1pjxA 314 87.54 b.68.6.1 104167 2pltA 98 87.67 b.6.1.1 22862 2bt9A 90 88.77 3dr2A 305 89.12 2kkqA 116 89.28