# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2c4xA 260 2.00e-10 1l0qA 391 3.29e-09 b.1.3.1,b.69.2.3 77644,77645 1oflA 481 6.37e-09 b.80.1.4 103934 1b4rA 80 0.000132 b.1.3.1 22072 2e7mA 113 0.000289 2yrlA 102 0.006871 1wgoA 123 0.08107 b.1.3.1 114618 1dboA 506 0.1009 b.80.1.4 28034 1kb0A 677 0.6084 a.3.1.6,b.70.1.1 68378,68379 1ugnA 198 0.9767 b.1.1.4,b.1.1.4 107828,107829 1hnf 182 1.208 1nkrA 201 1.358 b.1.1.4,b.1.1.4 21799,21800 3h8nA 195 2.263 2b5iC 199 2.391 b.1.2.1,b.1.2.1 127898,127899 1hnfA 182 2.710 b.1.1.1,b.1.1.3 19741,21680 1g0xA 197 2.901 b.1.1.4,b.1.1.4 21805,21806 1uctA 218 3.194 b.1.1.4,b.1.1.4 88467,88468 1yr2A 741 3.235 3l5jA 288 3.350 1dbgA 506 3.388 b.80.1.4 28033 1cczA 171 3.434 b.1.1.1,b.1.1.3 19758,21683 2kpnA 103 4.090 3ejjX 289 4.103 2o26U 290 4.580 1f6fB 210 4.746 b.1.2.1,b.1.2.1 22033,22034 3d48R 211 5.093 b.1.2.1,b.1.2.1 157289,157290 3l5iA 290 5.913 2w1nA 238 6.130 3bp5B 202 6.170 1fhgA 154 7.232 b.1.1.4 21706 3cjjA 219 7.377 1wit 93 7.574 1cdyA 178 7.784 b.1.1.1,b.1.1.3 19719,21658 3lqaC 192 7.826 1nkr 201 7.832 3lqmA 201 8.166 1fnlA 175 8.166 b.1.1.4,b.1.1.4 21783,21784 3bp6B 202 8.251 2v5mA 388 8.624 1gyhA 318 9.512 b.67.2.1 70757 2geeA 203 9.98 1cwvA 492 10.23 b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 2d3vA 196 10.54 2oz4A 265 10.58 b.1.1.3,b.1.1.4,b.1.1.4 149099,149100,149101 1ollA 188 11.10 b.1.1.4,b.1.1.4 93313,93314 1bqk 124 12.04 2idqA 105 12.27 3grwA 241 12.57 2wp3O 109 12.77 2ny1B 184 12.89 b.1.1.1,b.1.1.3 138764,138765 1y6kR 214 13.05 b.1.2.1,b.1.2.1 122663,122664 2ov0A 105 14.12 b.6.1.1 149033 2wwkO 109 14.25 1bqkA 124 14.49 b.6.1.1 22889 1cd9B 215 15.22 b.1.2.1,b.1.2.1 22041,22042 1cfb 205 15.33 2illA 195 15.36 1g1cA 99 15.41 b.1.1.4 65078 3kolA 156 16.12 2ee9A 95 16.25 2j6gA 266 16.94 3gl3A 152 17.40 2j8hA 197 17.65 2x1wL 213 17.82 2jllA 389 18.52 2v44A 189 18.62 2d7nA 93 19.17 b.1.18.10 131322 2x2uA 246 19.33 1u2hA 99 20.90 3b5hA 184 21.07 b.1.1.4,b.1.1.4 154838,154839 3hhrB 203 22.07 b.1.2.1,b.1.2.1 22005,22006 3f7rA 249 22.57 2gu3A 136 23.06 d.17.1.6,d.17.1.6 147178,147179 2wp3T 102 23.20 2pz4A 239 23.27 3e0gA 483 23.39 2v5sA 394 23.76 3c12A 138 24.05 3fvzA 329 24.08 1qa9A 102 25.51 b.1.1.1 19742 2dmcA 116 25.69 b.1.18.10 131572 3knbB 107 27.29 3l5hA 589 27.47 3knbA 100 27.66 3kldA 384 27.79 3jz7A 214 28.03 2f9sA 151 28.23 c.47.1.10 133168 1w2tA 432 28.39 b.29.1.19,b.67.2.3 120607,120608 2iepA 192 29.29 1qr4A 186 29.72 b.1.2.1,b.1.2.1 21986,21987 3irgA 100 29.87 3erxA 123 29.92 3hdcA 158 30.11 1bquA 215 30.15 b.1.2.1,b.1.2.1 22066,22067 1tlk 154 30.16 4pazA 123 31.05 b.6.1.1 22881 3irgB 107 31.63 2fcbA 173 31.96 b.1.1.4,b.1.1.4 21781,21782 2x42A 721 33.22 1id2A 106 34.18 b.6.1.1 62288 1pmyA 123 34.51 b.6.1.1 22888 1a22B 238 36.02 b.1.2.1,b.1.2.1 22003,22004 1cs6A 382 36.15 b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21760,21761,21762,21763 1f42A 306 37.17 b.1.1.4,b.1.2.1,b.1.2.1 59636,59637,59638 1wwcA 118 38.14 b.1.1.4 21778 2ux7A 122 38.46 1gsmA 210 39.26 b.1.1.4,b.1.1.4 65535,65536 3kcmA 154 40.72 2k7pA 188 40.89 2r15A 212 41.65 2zahA 331 42.21 1iarB 207 42.45 b.1.2.1,b.1.2.1 22037,22038 3fgbA 361 42.78 2qc5A 300 44.87 2x41A 721 45.53 1h2wA 710 49.57 b.69.7.1,c.69.1.4 76596,76597 1py0A 125 50.56 b.6.1.1 111645 1pazA 123 50.69 b.6.1.1 22878 1bqsA 209 50.76 b.1.1.4,b.1.1.4 21704,21705 2b5iB 214 51.50 b.1.2.1,b.1.2.1 127896,127897 2kkqA 116 52.08 1fyhB 229 52.20 b.1.2.1,b.1.2.1 22055,22056 1lyqA 104 52.73 b.1.18.17 78302 1iuzA 98 52.99 b.6.1.1 22861 3ewlA 142 53.14 1ziwA 680 56.92 2kshA 110 59.12 1v05A 96 59.61 b.1.18.10 113465 1zzoA 136 59.73 c.47.1.10 125913 2zr1B 267 60.33 2dg1A 333 60.97 b.68.6.1 131493 2kdgA 100 61.15 2w0pA 94 62.83 b.1.18.10 153738 1rhfA 182 63.17 b.1.1.1,b.1.1.4 97469,97470 3erwA 145 64.56 2wv3A 190 64.61 2bklA 695 64.90 3dr2A 305 66.80 3bn3B 196 67.14 3f7qA 234 67.17 1epfA 191 68.25 b.1.1.4,b.1.1.4 21694,21695 3bfoA 91 69.59 2prvA 153 70.14 d.369.1.1 149817 1juhA 350 70.59 b.82.1.5 71884 3darA 105 70.92 b.1.1.4 157466 1qg3A 195 71.15 b.1.2.1,b.1.2.1 21993,21994 2x10A 545 72.35 1t17A 148 72.42 d.129.3.6 112215 2brqA 97 72.91 b.1.18.10 129008 3jvpA 572 75.56 2yxmA 100 76.23 3dsgA 99 77.04 1qksA 567 77.33 a.3.1.2,b.70.2.1 15951,27710 2cpcA 113 77.57 3jyuA 229 78.21 2gk3A 256 78.28 c.23.16.9 147123 3ckaA 320 80.42 2hyxA 352 81.42 2wnwA 447 81.80 2hqvA 195 81.94 e.62.1.2 136674 2nqcA 138 83.64 b.1.18.10 148344 2b1kA 168 84.22 2tbvA 387 84.71 b.121.4.7 23302 3di2B 223 85.34 2a50B 168 85.52 2bk8A 97 86.64 1gxrA 337 87.81 b.69.4.1 70722 2ww8A 893 88.11