# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2c4xA 260 5.04e-11 1l0qA 391 2.80e-10 b.1.3.1,b.69.2.3 77644,77645 1oflA 481 1.52e-09 b.80.1.4 103934 2e7mA 113 3.49e-05 1b4rA 80 3.62e-05 b.1.3.1 22072 2yrlA 102 0.000567 1wgoA 123 0.03088 b.1.3.1 114618 1dboA 506 0.4237 b.80.1.4 28034 1nkrA 201 0.5002 b.1.1.4,b.1.1.4 21799,21800 1hnf 182 1.784 1ugnA 198 1.966 b.1.1.4,b.1.1.4 107828,107829 3h8nA 195 2.431 3l5iA 290 2.617 3l5jA 288 2.655 1g0xA 197 2.781 b.1.1.4,b.1.1.4 21805,21806 1nkr 201 3.521 2kpnA 103 3.778 1ollA 188 4.011 b.1.1.4,b.1.1.4 93313,93314 1kb0A 677 4.184 a.3.1.6,b.70.1.1 68378,68379 2b5iC 199 4.722 b.1.2.1,b.1.2.1 127898,127899 1f6fB 210 5.902 b.1.2.1,b.1.2.1 22033,22034 3d48R 211 6.101 b.1.2.1,b.1.2.1 157289,157290 3ejjX 289 6.319 2jllA 389 6.720 1hnfA 182 6.762 b.1.1.1,b.1.1.3 19741,21680 1cwvA 492 7.810 b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 2w1nA 238 8.391 1uctA 218 9.197 b.1.1.4,b.1.1.4 88467,88468 1cfb 205 9.669 2v44A 189 9.838 2ov0A 105 10.68 b.6.1.1 149033 3f7rA 249 10.94 2geeA 203 11.29 1id2A 106 12.53 b.6.1.1 62288 2pz4A 239 12.95 2idqA 105 13.30 2d3vA 196 13.79 1qr4A 186 14.33 b.1.2.1,b.1.2.1 21986,21987 2j6gA 266 15.56 2d7nA 93 17.41 b.1.18.10 131322 2x1wL 213 18.49 3lqmA 201 19.00 1cdyA 178 19.32 b.1.1.1,b.1.1.3 19719,21658 2o26U 290 20.88 1cd9B 215 21.98 b.1.2.1,b.1.2.1 22041,22042 2wwkO 109 22.85 1dbgA 506 22.93 b.80.1.4 28033 1lyqA 104 23.46 b.1.18.17 78302 3bp5B 202 23.52 1iuzA 98 24.39 b.6.1.1 22861 1fhgA 154 24.49 b.1.1.4 21706 3jz7A 214 25.27 1qa9A 102 26.55 b.1.1.1 19742 1bqk 124 28.66 2wp3O 109 28.71 1bqsA 209 28.98 b.1.1.4,b.1.1.4 21704,21705 1y6kR 214 29.40 b.1.2.1,b.1.2.1 122663,122664 3l5hA 589 29.86 1gyhA 318 32.16 b.67.2.1 70757 1z6jT 211 32.33 b.1.2.1,b.1.2.1 124527,124528 3f7qA 234 32.84 2ny1B 184 32.95 b.1.1.1,b.1.1.3 138764,138765 2ux7A 122 35.65 2ee9A 95 38.65 1bxvA 91 41.43 b.6.1.1 22875 1xezA 721 41.66 3knbB 107 42.64 1yr2A 741 43.27 3e0gA 483 43.39 3erxA 123 43.98 3cjjA 219 44.12 1bqkA 124 44.50 b.6.1.1 22889 1cczA 171 45.06 b.1.1.1,b.1.1.3 19758,21683 3hhrB 203 47.42 b.1.2.1,b.1.2.1 22005,22006 1sfdA 105 47.44 b.6.1.1 105480 1rhfA 182 49.03 b.1.1.1,b.1.1.4 97469,97470 1wwcA 118 50.57 b.1.1.4 21778 3f7pC 248 51.76 2gu3A 136 51.97 d.17.1.6,d.17.1.6 147178,147179 2dg1A 333 52.40 b.68.6.1 131493 2pltA 98 52.64 b.6.1.1 22862 1g1cA 99 52.77 b.1.1.4 65078 1ygeA 839 53.74 a.119.1.1,b.12.1.1 19234,23634 1opoA 348 54.24 b.121.4.7 87240 1fyhB 229 54.35 b.1.2.1,b.1.2.1 22055,22056 1u2hA 99 55.52 1fnaA 91 57.37 b.1.2.1 21971 3fgbA 361 59.25 2x10A 545 59.25 1v05A 96 59.52 b.1.18.10 113465 1f42A 306 60.90 b.1.1.4,b.1.2.1,b.1.2.1 59636,59637,59638 2dmcA 116 63.12 b.1.18.10 131572 1aac 105 64.03 2kkqA 116 64.06 2brqA 97 65.79 b.1.18.10 129008 1pmyA 123 67.16 b.6.1.1 22888 2x2uA 246 69.14 1eerB 227 69.69 b.1.2.1,b.1.2.1 22011,22012 2bk8A 97 70.76 2zr1B 267 71.08 3di2B 223 71.24 3b5hA 184 71.34 b.1.1.4,b.1.1.4 154838,154839 2aaiB 262 72.09 b.42.2.1,b.42.2.1 25561,25562 1wit 93 72.32 3bfoA 91 73.09 3gl3A 152 73.45 3fvzA 329 75.24 1fnlA 175 75.82 b.1.1.4,b.1.1.4 21783,21784 3kldA 384 78.98 2v5mA 388 79.17 2b5iB 214 79.58 b.1.2.1,b.1.2.1 127896,127897 2k7pA 188 79.63 2a74A 643 79.89 2w0pA 94 80.61 b.1.18.10 153738 2jixB 225 80.66 b.1.2.1,b.1.2.1 148107,148108 1gsmA 210 80.91 b.1.1.4,b.1.1.4 65535,65536 3kolA 156 81.10 2zahA 331 81.82 1qg3A 195 82.00 b.1.2.1,b.1.2.1 21993,21994 3c12A 138 83.95 3irgB 107 84.72 2wp3T 102 84.96 1h2wA 710 86.48 b.69.7.1,c.69.1.4 76596,76597 3lqaC 192 86.70 3bp6B 202 88.90