# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2c4xA 260 3.03e-11 1l0qA 391 3.14e-10 b.1.3.1,b.69.2.3 77644,77645 1oflA 481 1.34e-09 b.80.1.4 103934 1b4rA 80 4.07e-05 b.1.3.1 22072 2e7mA 113 0.000123 2yrlA 102 0.003297 1wgoA 123 0.05785 b.1.3.1 114618 1dboA 506 0.09666 b.80.1.4 28034 1kb0A 677 0.3516 a.3.1.6,b.70.1.1 68378,68379 1hnf 182 0.5395 1ugnA 198 0.5399 b.1.1.4,b.1.1.4 107828,107829 1nkrA 201 0.7330 b.1.1.4,b.1.1.4 21799,21800 1hnfA 182 0.7419 b.1.1.1,b.1.1.3 19741,21680 2kpnA 103 1.200 1g0xA 197 1.475 b.1.1.4,b.1.1.4 21805,21806 2b5iC 199 1.514 b.1.2.1,b.1.2.1 127898,127899 3h8nA 195 1.714 1uctA 218 1.827 b.1.1.4,b.1.1.4 88467,88468 1cczA 171 2.223 b.1.1.1,b.1.1.3 19758,21683 2w1nA 238 2.348 3ejjX 289 2.488 3l5jA 288 3.096 1yr2A 741 3.461 1fnlA 175 3.803 b.1.1.4,b.1.1.4 21783,21784 3cjjA 219 4.509 3lqaC 192 4.819 1dbgA 506 4.836 b.80.1.4 28033 1cdyA 178 4.865 b.1.1.1,b.1.1.3 19719,21658 1f6fB 210 5.175 b.1.2.1,b.1.2.1 22033,22034 3l5iA 290 5.427 1ollA 188 6.026 b.1.1.4,b.1.1.4 93313,93314 3bp6B 202 6.206 3bp5B 202 7.576 2ny1B 184 7.660 b.1.1.1,b.1.1.3 138764,138765 1nkr 201 7.857 3d48R 211 7.873 b.1.2.1,b.1.2.1 157289,157290 3lqmA 201 8.169 2o26U 290 8.422 2d3vA 196 8.450 3grwA 241 8.685 2j6gA 266 8.694 2v5mA 388 9.344 1wit 93 10.39 1gyhA 318 10.88 b.67.2.1 70757 1fhgA 154 11.30 b.1.1.4 21706 2oz4A 265 11.43 b.1.1.3,b.1.1.4,b.1.1.4 149099,149100,149101 3gl3A 152 12.62 2geeA 203 14.11 1qg3A 195 14.19 b.1.2.1,b.1.2.1 21993,21994 2d7nA 93 14.87 b.1.18.10 131322 2jllA 389 15.34 1cfb 205 15.98 2x1wL 213 16.15 1cwvA 492 16.30 b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 2gu3A 136 16.75 d.17.1.6,d.17.1.6 147178,147179 2illA 195 16.89 3kolA 156 16.92 1qa9A 102 17.19 b.1.1.1 19742 1qr4A 186 17.31 b.1.2.1,b.1.2.1 21986,21987 3f7rA 249 17.99 2ee9A 95 18.03 3fvzA 329 18.06 2v5sA 394 18.44 2fcbA 173 18.53 b.1.1.4,b.1.1.4 21781,21782 2dmcA 116 19.68 b.1.18.10 131572 3ckaA 320 19.96 3b5hA 184 21.49 b.1.1.4,b.1.1.4 154838,154839 3l5hA 589 21.69 2v44A 189 21.98 1bqk 124 22.14 2x2uA 246 22.16 3c12A 138 22.56 1g1cA 99 23.56 b.1.1.4 65078 2zr1B 267 24.28 1cd9B 215 24.33 b.1.2.1,b.1.2.1 22041,22042 3kldA 384 25.29 1bquA 215 26.12 b.1.2.1,b.1.2.1 22066,22067 3e0gA 483 26.95 1bqsA 209 27.20 b.1.1.4,b.1.1.4 21704,21705 1ziwA 680 28.31 2wwkO 109 28.96 2wp3T 102 29.13 2k7pA 188 29.22 3hdcA 158 29.44 1gsmA 210 29.62 b.1.1.4,b.1.1.4 65535,65536 1w2tA 432 30.39 b.29.1.19,b.67.2.3 120607,120608 2j8hA 197 30.70 3jz7A 214 30.74 2f9sA 151 30.74 c.47.1.10 133168 2kshA 110 30.92 1y6kR 214 31.02 b.1.2.1,b.1.2.1 122663,122664 2pz4A 239 32.42 2b5iB 214 33.06 b.1.2.1,b.1.2.1 127896,127897 2iepA 192 33.41 2ov0A 105 34.18 b.6.1.1 149033 2idqA 105 34.21 1lyqA 104 34.25 b.1.18.17 78302 2wp3O 109 34.32 3f7qA 234 34.60 1bqkA 124 34.75 b.6.1.1 22889 2gk3A 256 34.96 c.23.16.9 147123 3fgbA 361 37.04 2x42A 721 37.35 2bklA 695 37.40 1cs6A 382 38.74 b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21760,21761,21762,21763 1wwcA 118 39.15 b.1.1.4 21778 1iarB 207 39.58 b.1.2.1,b.1.2.1 22037,22038 3knbA 100 40.52 2zahA 331 41.13 2x10A 545 43.52 2x41A 721 43.62 3hhrB 203 44.79 b.1.2.1,b.1.2.1 22005,22006 3c2uA 538 46.81 1qfmA 710 47.57 b.69.7.1,c.69.1.4 27673,34641 1id2A 106 47.90 b.6.1.1 62288 3dr2A 305 48.29 3jvpA 572 48.58 1vemA 516 49.28 b.3.1.1,c.1.8.1 120021,120022 1f00I 282 49.94 b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 2k7qA 191 50.37 1eerB 227 50.79 b.1.2.1,b.1.2.1 22011,22012 2dg1A 333 51.20 b.68.6.1 131493 3bn3B 196 52.77 2nqcA 138 53.93 b.1.18.10 148344 1pjxA 314 54.39 b.68.6.1 104167 1h2wA 710 54.49 b.69.7.1,c.69.1.4 76596,76597 1a22B 238 55.60 b.1.2.1,b.1.2.1 22003,22004 3kcmA 154 55.61 3irgA 100 56.55 2wv3A 190 58.50 1tlk 154 58.85 1u2hA 99 59.14 1v05A 96 59.81 b.1.18.10 113465 3buuA 229 60.10 3gleA 295 61.85 2tbvA 387 62.31 b.121.4.7 23302 3erxA 123 64.46 1qksA 567 65.34 a.3.1.2,b.70.2.1 15951,27710 1q7fA 286 66.48 b.68.9.1 96036 2prvA 153 68.22 d.369.1.1 149817 1zxq 192 68.77 1yfqA 342 69.47 b.69.4.2 116680 1rhfA 182 70.46 b.1.1.1,b.1.1.4 97469,97470 3bdqA 110 71.40 3erwA 145 71.69 2qc5A 300 72.29 2a50B 168 72.80 2w0pA 94 73.45 b.1.18.10 153738 1abrB 267 75.09 b.42.2.1,b.42.2.1 25563,25564 1pz4A 116 75.13 d.106.1.1 95400 3f7pC 248 75.30 2z2nA 299 75.54 1epfA 191 78.00 b.1.1.4,b.1.1.4 21694,21695 2brqA 97 78.31 b.1.18.10 129008 3fkfA 148 79.36 1zzoA 136 79.50 c.47.1.10 125913 3eqnA 758 80.50 1juhA 350 80.55 b.82.1.5 71884 1f42A 306 81.60 b.1.1.4,b.1.2.1,b.1.2.1 59636,59637,59638 2hjjA 87 81.80 d.50.3.3 147295 1opoA 348 83.46 b.121.4.7 87240 1vcaA 202 83.92 b.1.1.3,b.1.1.4 21649,21685 3knbB 107 84.96 1iuzA 98 85.72 b.6.1.1 22861 2q7nA 488 86.76 3di2B 223 87.66 3ewlA 142 88.24 3c71A 143 88.69