# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2c4xA 260 3.48e-09 1oflA 481 1.12e-06 b.80.1.4 103934 1l0qA 391 1.28e-06 b.1.3.1,b.69.2.3 77644,77645 1b4rA 80 0.000723 b.1.3.1 22072 2e7mA 113 0.000733 2yrlA 102 0.01145 1wgoA 123 0.4192 b.1.3.1 114618 1hnf 182 1.024 1uctA 218 1.052 b.1.1.4,b.1.1.4 88467,88468 1ugnA 198 1.306 b.1.1.4,b.1.1.4 107828,107829 1nkrA 201 1.311 b.1.1.4,b.1.1.4 21799,21800 1kb0A 677 1.807 a.3.1.6,b.70.1.1 68378,68379 1cfb 205 2.241 1hnfA 182 2.310 b.1.1.1,b.1.1.3 19741,21680 1bquA 215 2.447 b.1.2.1,b.1.2.1 22066,22067 1cczA 171 2.508 b.1.1.1,b.1.1.3 19758,21683 2b5iC 199 2.760 b.1.2.1,b.1.2.1 127898,127899 3h8nA 195 3.095 1qg3A 195 3.396 b.1.2.1,b.1.2.1 21993,21994 1g0xA 197 3.514 b.1.1.4,b.1.1.4 21805,21806 2kpnA 103 3.758 3b5hA 184 4.008 b.1.1.4,b.1.1.4 154838,154839 2ww8A 893 4.062 1ollA 188 4.450 b.1.1.4,b.1.1.4 93313,93314 3l5iA 290 4.904 3e0gA 483 6.388 1abrB 267 6.389 b.42.2.1,b.42.2.1 25563,25564 3d48R 211 6.569 b.1.2.1,b.1.2.1 157289,157290 1q7fA 286 6.702 b.68.9.1 96036 2w1nA 238 6.935 1f6fB 210 7.306 b.1.2.1,b.1.2.1 22033,22034 1fnlA 175 8.831 b.1.1.4,b.1.1.4 21783,21784 3grwA 241 9.042 3kldA 384 9.924 3bp5B 202 10.57 3cjjA 219 10.63 3ejjX 289 10.69 1cs6A 382 11.27 b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21760,21761,21762,21763 1nkr 201 11.87 3l5hA 589 12.13 3f7rA 249 12.49 1gyhA 318 12.55 b.67.2.1 70757 2geeA 203 13.10 2ny1B 184 14.22 b.1.1.1,b.1.1.3 138764,138765 3fvzA 329 14.36 3bp6B 202 14.44 2oz4A 265 14.65 b.1.1.3,b.1.1.4,b.1.1.4 149099,149100,149101 2v44A 189 14.90 2j8hA 197 14.94 2ov0A 105 15.60 b.6.1.1 149033 2idqA 105 16.46 1dboA 506 17.44 b.80.1.4 28034 1bqk 124 17.49 1qr4A 186 17.54 b.1.2.1,b.1.2.1 21986,21987 3lqmA 201 18.23 2d7nA 93 18.62 b.1.18.10 131322 2zr1B 267 18.97 1wit 93 19.11 2pz4A 239 19.21 3jz7A 214 19.55 1v04A 355 19.70 b.68.6.2 100240 1fhgA 154 19.73 b.1.1.4 21706 3gnzP 213 19.74 2x1wL 213 19.75 2q7nA 488 21.08 2wp3T 102 21.15 3lqaC 192 21.15 3gl3A 152 21.39 2illA 195 21.59 2d3vA 196 21.59 3f7qA 234 21.62 1g1cA 99 22.44 b.1.1.4 65078 1cd9B 215 22.87 b.1.2.1,b.1.2.1 22041,22042 1h2wA 710 23.19 b.69.7.1,c.69.1.4 76596,76597 3hdcA 158 23.61 3k5rA 218 24.32 1f42A 306 24.37 b.1.1.4,b.1.2.1,b.1.2.1 59636,59637,59638 1n26A 325 24.43 b.1.1.4,b.1.2.1,b.1.2.1 79850,79851,79852 2k7pA 188 24.73 2v5mA 388 24.91 1ziwA 680 25.00 2o26U 290 25.59 1id2A 106 25.69 b.6.1.1 62288 2qp2A 511 26.08 1y6kR 214 26.69 b.1.2.1,b.1.2.1 122663,122664 1cfbA 205 26.95 b.1.2.1,b.1.2.1 21991,21992 2f9sA 151 27.47 c.47.1.10 133168 2jllA 389 27.92 3l5jA 288 27.94 2f8aA 208 27.97 c.47.1.10 133119 2x10A 545 28.09 1orvA 728 29.50 b.70.3.1,c.69.1.24 87354,87355 2ee9A 95 29.62 2wp3O 109 29.99 2k7qA 191 30.46 1tlk 154 31.06 3knbA 100 32.68 2dmcA 116 32.87 b.1.18.10 131572 1iarB 207 34.01 b.1.2.1,b.1.2.1 22037,22038 1bqkA 124 34.51 b.6.1.1 22889 2r15A 212 35.35 2x42A 721 35.49 2fcbA 173 36.71 b.1.1.4,b.1.1.4 21781,21782 1yr2A 741 36.87 2vzsA 1032 37.25 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 153727,153728,153729,153730,153731 3kolA 156 38.28 1rhfA 182 38.79 b.1.1.1,b.1.1.4 97469,97470 1yfqA 342 39.23 b.69.4.2 116680 1eerB 227 39.34 b.1.2.1,b.1.2.1 22011,22012 1cwvA 492 39.89 b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 1wwcA 118 39.89 b.1.1.4 21778 3hhrB 203 40.53 b.1.2.1,b.1.2.1 22005,22006 2cqsA 842 42.02 2cpcA 113 42.19 1cdyA 178 42.20 b.1.1.1,b.1.1.3 19719,21658 2dg1A 333 42.35 b.68.6.1 131493 1cidA 177 43.28 b.1.1.1,b.1.1.3 19740,21679 2wv3A 190 44.35 3c12A 138 45.91 2uzjA 253 46.45 2d5lA 706 46.91 1umwA 237 48.22 d.223.1.2,d.223.1.2 99631,99632 2iepA 192 49.09 1a22B 238 49.73 b.1.2.1,b.1.2.1 22003,22004 2qmjA 870 50.30 3irgA 100 50.53 1pmyA 123 50.59 b.6.1.1 22888 2bcfA 276 50.64 2b5iB 214 51.15 b.1.2.1,b.1.2.1 127896,127897 2prvA 153 51.24 d.369.1.1 149817 3erxA 123 51.80 3biqA 467 52.41 2nqcA 138 53.32 b.1.18.10 148344 1f00I 282 53.55 b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 3irgB 107 54.45 3hrzA 627 54.91 1juhA 350 55.93 b.82.1.5 71884 3k25A 289 56.55 2ea7A 434 56.56 2wwkO 109 56.62 2a38A 194 56.74 1lyqA 104 56.80 b.1.18.17 78302 3bmxA 642 57.34 3darA 105 57.84 b.1.1.4 157466 3knbB 107 58.15 2ghsA 326 58.29 b.68.6.1 135209 2d5fA 493 58.93 1fyhB 229 60.53 b.1.2.1,b.1.2.1 22055,22056 1pazA 123 61.23 b.6.1.1 22878 3fgbA 361 61.41 1zxq 192 61.69 3bn3B 196 63.69 1pjxA 314 64.38 b.68.6.1 104167 2ux7A 122 65.21 2aaiB 262 65.24 b.42.2.1,b.42.2.1 25561,25562 1v05A 96 65.97 b.1.18.10 113465 2bk8A 97 66.07 2q9oA 559 66.34 b.6.1.3,b.6.1.3,b.6.1.3 150149,150150,150151 1m2tB 263 66.78 b.42.2.1,b.42.2.1 84762,84763 2w0pA 94 67.44 b.1.18.10 153738 2pltA 98 67.73 b.6.1.1 22862 1nexB 464 69.54 a.158.1.1,b.69.4.1 80443,80444 3lb6C 380 70.89 2gk3A 256 71.70 c.23.16.9 147123 1sfdA 105 71.75 b.6.1.1 105480 4pazA 123 71.82 b.6.1.1 22881 2v5sA 394 72.05 3f7pC 248 74.70 2brqA 97 77.29 b.1.18.10 129008 2j04B 524 78.81 1iuzA 98 81.01 b.6.1.1 22861 3acpA 417 82.79 3gleA 295 83.26 1opoA 348 83.54 b.121.4.7 87240 1mjuH 227 84.30 b.1.1.1,b.1.1.2 91302,91303 2jixB 225 85.55 b.1.2.1,b.1.2.1 148107,148108 3l2oB 312 86.00 3gfcA 425 87.69 1qfhA 212 88.00 b.1.18.10,b.1.18.10 21893,21894 1py0A 125 88.09 b.6.1.1 111645 2gu3A 136 89.11 d.17.1.6,d.17.1.6 147178,147179