# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2c4xA 260 3.81e-11 1l0qA 391 4.76e-10 b.1.3.1,b.69.2.3 77644,77645 1oflA 481 6.92e-10 b.80.1.4 103934 1b4rA 80 4.54e-05 b.1.3.1 22072 2e7mA 113 0.000168 2yrlA 102 0.004208 1dboA 506 0.04312 b.80.1.4 28034 1wgoA 123 0.07085 b.1.3.1 114618 1ugnA 198 0.6236 b.1.1.4,b.1.1.4 107828,107829 1hnf 182 1.167 1kb0A 677 1.298 a.3.1.6,b.70.1.1 68378,68379 1dbgA 506 1.430 b.80.1.4 28033 3h8nA 195 1.467 1g0xA 197 1.574 b.1.1.4,b.1.1.4 21805,21806 1nkrA 201 1.808 b.1.1.4,b.1.1.4 21799,21800 2b5iC 199 2.072 b.1.2.1,b.1.2.1 127898,127899 1uctA 218 2.477 b.1.1.4,b.1.1.4 88467,88468 3ejjX 289 2.544 2kpnA 103 3.551 3l5jA 288 3.642 3d48R 211 3.681 b.1.2.1,b.1.2.1 157289,157290 2v44A 189 4.022 1hnfA 182 4.488 b.1.1.1,b.1.1.3 19741,21680 1cczA 171 4.492 b.1.1.1,b.1.1.3 19758,21683 1cdyA 178 5.093 b.1.1.1,b.1.1.3 19719,21658 1f6fB 210 5.951 b.1.2.1,b.1.2.1 22033,22034 2o26U 290 6.402 1yr2A 741 6.610 2w1nA 238 6.621 1cwvA 492 7.377 b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 1ollA 188 8.030 b.1.1.4,b.1.1.4 93313,93314 2d3vA 196 8.470 2idqA 105 8.531 3lqaC 192 8.570 2ov0A 105 8.605 b.6.1.1 149033 3lqmA 201 9.295 3cjjA 219 9.475 3l5iA 290 9.614 1bqk 124 10.22 1wit 93 10.39 3bp6B 202 11.72 2x1wL 213 12.34 1fhgA 154 12.44 b.1.1.4 21706 1nkr 201 12.64 2tbvA 387 13.55 b.121.4.7 23302 3e0gA 483 13.71 2x2uA 246 13.72 2geeA 203 14.65 2v5mA 388 15.05 1id2A 106 15.61 b.6.1.1 62288 2wp3O 109 15.62 2d7nA 93 15.80 b.1.18.10 131322 3bp5B 202 15.85 2wwkO 109 16.28 1y6kR 214 16.78 b.1.2.1,b.1.2.1 122663,122664 3l5hA 589 18.19 3gl3A 152 18.20 1bqkA 124 21.61 b.6.1.1 22889 2ny1B 184 21.90 b.1.1.1,b.1.1.3 138764,138765 1fnlA 175 21.96 b.1.1.4,b.1.1.4 21783,21784 1cd9B 215 22.18 b.1.2.1,b.1.2.1 22041,22042 2j6gA 266 22.41 2zahA 331 22.71 1a22B 238 23.78 b.1.2.1,b.1.2.1 22003,22004 3kolA 156 24.45 2oz4A 265 25.37 b.1.1.3,b.1.1.4,b.1.1.4 149099,149100,149101 2wp3T 102 25.44 3fvzA 329 25.98 2pz4A 239 26.13 1ziwA 680 27.12 1g1cA 99 27.45 b.1.1.4 65078 2ee9A 95 27.76 2x42A 721 28.02 2zr1B 267 28.57 3grwA 241 28.81 2v5sA 394 29.03 3kldA 384 30.41 3hhrB 203 30.69 b.1.2.1,b.1.2.1 22005,22006 1bquA 215 30.84 b.1.2.1,b.1.2.1 22066,22067 3irgA 100 30.96 2ux7A 122 33.62 3knbB 107 34.06 3knbA 100 34.12 3b5hA 184 34.96 b.1.1.4,b.1.1.4 154838,154839 2x41A 721 35.05 3f7rA 249 36.57 2jllA 389 36.59 2illA 195 37.52 1cfb 205 37.56 2prvA 153 38.06 d.369.1.1 149817 3c12A 138 38.15 2f9sA 151 38.80 c.47.1.10 133168 2dmcA 116 39.22 b.1.18.10 131572 1juhA 350 39.40 b.82.1.5 71884 1u2hA 99 39.91 2j8hA 197 43.50 1sfdA 105 44.77 b.6.1.1 105480 2w0pA 94 45.11 b.1.18.10 153738 3irgB 107 45.15 3hdcA 158 45.95 1gyhA 318 47.13 b.67.2.1 70757 1pmyA 123 47.48 b.6.1.1 22888 1f42A 306 47.86 b.1.1.4,b.1.2.1,b.1.2.1 59636,59637,59638 1qa9A 102 48.73 b.1.1.1 19742 3jz7A 214 48.85 2k7pA 188 49.39 1qr4A 186 49.90 b.1.2.1,b.1.2.1 21986,21987 2cpcA 113 50.88 3erxA 123 51.20 3kcmA 154 51.51 1iuzA 98 53.27 b.6.1.1 22861 1vemA 516 53.73 b.3.1.1,c.1.8.1 120021,120022 2gu3A 136 55.30 d.17.1.6,d.17.1.6 147178,147179 1wwcA 118 56.11 b.1.1.4 21778 1opoA 348 57.40 b.121.4.7 87240 1fyhB 229 59.07 b.1.2.1,b.1.2.1 22055,22056 1iarB 207 59.58 b.1.2.1,b.1.2.1 22037,22038 1aac 105 60.09 1v05A 96 60.98 b.1.18.10 113465 1t17A 148 61.13 d.129.3.6 112215 3f7qA 234 61.46 1py0A 125 62.41 b.6.1.1 111645 3bx4B 146 62.67 2kshA 110 63.37 4pazA 123 63.66 b.6.1.1 22881 1bqsA 209 64.09 b.1.1.4,b.1.1.4 21704,21705 2fcbA 173 64.77 b.1.1.4,b.1.1.4 21781,21782 1w2tA 432 65.23 b.29.1.19,b.67.2.3 120607,120608 1tlk 154 65.83 3c71A 143 66.84 1gsmA 210 67.09 b.1.1.4,b.1.1.4 65535,65536 2bk8A 97 69.49 1uw6A 211 70.50 b.96.1.1 100079 1f00I 282 71.17 b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 3bfoA 91 71.56 2aanA 139 71.59 2b5iB 214 71.77 b.1.2.1,b.1.2.1 127896,127897 1pazA 123 72.17 b.6.1.1 22878 2iepA 192 72.65 1lyqA 104 72.75 b.1.18.17 78302 1zglM 209 75.35 2gk3A 256 76.30 c.23.16.9 147123 3di2B 223 76.34 3bn3B 196 76.91 1eerB 227 77.06 b.1.2.1,b.1.2.1 22011,22012 2aaiB 262 78.67 b.42.2.1,b.42.2.1 25561,25562 1cs6A 382 78.72 b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21760,21761,21762,21763 3gleA 295 79.64 3jyuA 229 81.35 3fgbA 361 83.02 1cidA 177 83.25 b.1.1.1,b.1.1.3 19740,21679 2yxmA 100 83.55 1rhfA 182 85.92 b.1.1.1,b.1.1.4 97469,97470 3eqnA 758 87.09 3dsgA 99 87.87 2brqA 97 88.58 b.1.18.10 129008 2kkqA 116 88.89 2r15A 212 89.46