# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2c4xA 260 4.33e-11 1l0qA 391 2.36e-10 b.1.3.1,b.69.2.3 77644,77645 1oflA 481 1.55e-09 b.80.1.4 103934 1b4rA 80 3.93e-05 b.1.3.1 22072 2e7mA 113 0.000102 2yrlA 102 0.001366 1dboA 506 0.01612 b.80.1.4 28034 1wgoA 123 0.06023 b.1.3.1 114618 1dbgA 506 0.5590 b.80.1.4 28033 1ugnA 198 0.6103 b.1.1.4,b.1.1.4 107828,107829 1hnf 182 0.7482 1kb0A 677 0.9807 a.3.1.6,b.70.1.1 68378,68379 1nkrA 201 1.416 b.1.1.4,b.1.1.4 21799,21800 2kpnA 103 1.522 3h8nA 195 1.796 1hnfA 182 1.832 b.1.1.1,b.1.1.3 19741,21680 2o26U 290 1.960 3ejjX 289 2.024 2b5iC 199 2.142 b.1.2.1,b.1.2.1 127898,127899 1uctA 218 2.220 b.1.1.4,b.1.1.4 88467,88468 1f6fB 210 3.034 b.1.2.1,b.1.2.1 22033,22034 1g0xA 197 3.154 b.1.1.4,b.1.1.4 21805,21806 1fnlA 175 4.487 b.1.1.4,b.1.1.4 21783,21784 3l5jA 288 4.544 1cczA 171 4.674 b.1.1.1,b.1.1.3 19758,21683 3d48R 211 4.697 b.1.2.1,b.1.2.1 157289,157290 2w1nA 238 4.923 1yr2A 741 5.030 1cdyA 178 5.304 b.1.1.1,b.1.1.3 19719,21658 1ollA 188 5.697 b.1.1.4,b.1.1.4 93313,93314 1fhgA 154 5.740 b.1.1.4 21706 1cwvA 492 6.027 b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 3lqaC 192 6.362 3l5iA 290 6.502 3bp6B 202 6.625 3cjjA 219 7.726 1wit 93 7.870 2d3vA 196 8.033 3bp5B 202 8.301 2v44A 189 8.919 2wwkO 109 9.471 3lqmA 201 10.53 2oz4A 265 10.77 b.1.1.3,b.1.1.4,b.1.1.4 149099,149100,149101 2wp3O 109 11.15 2idqA 105 12.08 3f7rA 249 12.17 2v5mA 388 12.60 1nkr 201 12.82 2x1wL 213 12.93 3e0gA 483 13.33 3kolA 156 13.86 1cfb 205 13.90 3gl3A 152 14.35 1g1cA 99 14.55 b.1.1.4 65078 3grwA 241 14.73 2d7nA 93 15.61 b.1.18.10 131322 1v05A 96 15.62 b.1.18.10 113465 2v5sA 394 16.45 2ov0A 105 17.29 b.6.1.1 149033 2ny1B 184 18.34 b.1.1.1,b.1.1.3 138764,138765 2ee9A 95 18.49 2j6gA 266 18.96 3kldA 384 19.78 1bquA 215 20.86 b.1.2.1,b.1.2.1 22066,22067 1bqk 124 21.77 1a22B 238 22.35 b.1.2.1,b.1.2.1 22003,22004 3c12A 138 22.57 2dmcA 116 22.87 b.1.18.10 131572 1id2A 106 24.00 b.6.1.1 62288 2jllA 389 24.32 1tlk 154 24.36 3knbB 107 24.67 3fvzA 329 24.80 3l5hA 589 24.86 1cd9B 215 25.53 b.1.2.1,b.1.2.1 22041,22042 1wwcA 118 26.25 b.1.1.4 21778 2illA 195 26.52 1ziwA 680 26.72 2wp3T 102 28.13 2w0pA 94 28.80 b.1.18.10 153738 1qr4A 186 28.95 b.1.2.1,b.1.2.1 21986,21987 2x2uA 246 29.64 1bqkA 124 30.03 b.6.1.1 22889 2geeA 203 30.47 2zr1B 267 31.02 1gsmA 210 31.36 b.1.1.4,b.1.1.4 65535,65536 3b5hA 184 31.46 b.1.1.4,b.1.1.4 154838,154839 3jz7A 214 31.71 2pz4A 239 31.73 3irgB 107 31.96 2k7pA 188 32.30 3irgA 100 33.05 3f7qA 234 33.37 1qa9A 102 34.08 b.1.1.1 19742 1u2hA 99 34.71 1y6kR 214 35.21 b.1.2.1,b.1.2.1 122663,122664 3knbA 100 35.44 2zahA 331 35.68 2j8hA 197 36.65 1bqsA 209 38.81 b.1.1.4,b.1.1.4 21704,21705 1cs6A 382 40.40 b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21760,21761,21762,21763 2f9sA 151 40.79 c.47.1.10 133168 4pazA 123 41.65 b.6.1.1 22881 1iuzA 98 41.81 b.6.1.1 22861 2iepA 192 41.92 1gyhA 318 43.75 b.67.2.1 70757 1vemA 516 45.42 b.3.1.1,c.1.8.1 120021,120022 1lyqA 104 48.24 b.1.18.17 78302 2kshA 110 48.65 3gleA 295 49.93 2fcbA 173 50.27 b.1.1.4,b.1.1.4 21781,21782 1r9cA 139 50.43 d.32.1.2 97255 1juhA 350 51.68 b.82.1.5 71884 1f42A 306 51.86 b.1.1.4,b.1.2.1,b.1.2.1 59636,59637,59638 2x42A 721 52.08 1pmyA 123 52.32 b.6.1.1 22888 2brqA 97 52.69 b.1.18.10 129008 2x10A 545 53.59 1wisA 124 54.89 b.1.2.1 120975 2v9tA 117 54.95 3erxA 123 56.77 2yxmA 100 57.70 3hdcA 158 58.26 3kcmA 154 58.36 2b5iB 214 58.91 b.1.2.1,b.1.2.1 127896,127897 2x41A 721 60.93 1x6zA 123 61.33 d.24.1.1 121763 1fyhB 229 63.38 b.1.2.1,b.1.2.1 22055,22056 1iarB 207 63.71 b.1.2.1,b.1.2.1 22037,22038 1sfdA 105 64.64 b.6.1.1 105480 2prvA 153 64.73 d.369.1.1 149817 1zglM 209 64.91 3f7pC 248 65.86 1f00I 282 66.03 b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 2r15A 212 66.41 1xezA 721 67.08 2cpcA 113 67.56 2ux7A 122 67.77 3c71A 143 68.50 3fgbA 361 68.76 1pazA 123 69.23 b.6.1.1 22878 1waaA 93 70.02 2bk8A 97 70.74 2k7qA 191 71.30 1t17A 148 72.25 d.129.3.6 112215 1ygeA 839 73.52 a.119.1.1,b.12.1.1 19234,23634 3bfoA 91 76.64 1aac 105 77.33 2tbvA 387 79.75 b.121.4.7 23302 2gu3A 136 80.18 d.17.1.6,d.17.1.6 147178,147179 2kkqA 116 81.23 2nqcA 138 82.45 b.1.18.10 148344 3hhrB 203 82.89 b.1.2.1,b.1.2.1 22005,22006 3di2B 223 83.12 2hyxA 352 84.80 3eqnA 758 84.92 1qg3A 195 86.01 b.1.2.1,b.1.2.1 21993,21994 2hqvA 195 88.76 e.62.1.2 136674