# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l0qA 391 0.000104 b.1.3.1,b.69.2.3 77644,77645 2c4xA 260 0.003848 1b4rA 80 0.1130 b.1.3.1 22072 2yrlA 102 0.4012 2e7mA 113 0.6932 1hnfA 182 0.8417 b.1.1.1,b.1.1.3 19741,21680 1hnf 182 0.8981 3dlqR 211 1.487 1wgoA 123 1.910 b.1.3.1 114618 3lngA 215 2.163 1f2qA 176 3.102 b.1.1.4,b.1.1.4 21789,21790 3lneA 213 3.972 2x2uA 246 4.135 3lnfA 213 4.154 3grwA 241 4.569 2geeA 203 4.598 1cs6A 382 4.673 b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21760,21761,21762,21763 3k5rA 218 4.720 1qr4A 186 5.310 b.1.2.1,b.1.2.1 21986,21987 2w1nA 238 6.370 2jllA 389 7.260 3k5sA 217 7.600 2ny1B 184 7.859 b.1.1.1,b.1.1.3 138764,138765 3lnhA 213 7.900 3lniA 213 8.618 2x10A 545 9.251 1lyqA 104 13.48 b.1.18.17 78302 3kldA 384 14.49 1ci3M 249 14.93 b.2.6.1,b.84.2.2 22480,28266 2blfA 373 16.33 2wiiA 645 17.91 2v5sA 394 18.52 2ww5A 468 20.17 3g6jA 644 20.97 3hrzA 627 21.14 1cd9B 215 21.91 b.1.2.1,b.1.2.1 22041,22042 3e0gA 483 22.99 2o26U 290 23.44 2kpnA 103 24.54 3l5iA 290 26.06 2wbxA 102 26.32 3d48R 211 27.34 b.1.2.1,b.1.2.1 157289,157290 2v44A 189 27.91 1kb0A 677 28.36 a.3.1.6,b.70.1.1 68378,68379 8fabA 212 29.59 b.1.1.1,b.1.1.2 19772,20882 1u2hA 99 30.21 1uctA 218 30.35 b.1.1.4,b.1.1.4 88467,88468 2a74A 643 33.93 1cfb 205 34.03 1a22B 238 34.80 b.1.2.1,b.1.2.1 22003,22004 3ejjX 289 34.98 3k67A 159 35.07 3hn3A 613 35.29 1fyhB 229 35.50 b.1.2.1,b.1.2.1 22055,22056 2iepA 192 35.66 1e2wA 251 35.83 b.2.6.1,b.84.2.2 22466,28252 2r15A 212 35.99 1fsoA 139 36.58 b.1.18.8 60007 1pbyB 337 37.11 b.69.2.2 94422 2ww8A 893 37.73 1ev2E 220 38.02 b.1.1.4,b.1.1.4 21738,21739 1g1cA 99 39.37 b.1.1.4 65078 3fvzA 329 39.48 1bxvA 91 39.95 b.6.1.1 22875 2bibA 547 40.95 b.109.1.1,d.157.1.8 128581,128582 1itbB 315 41.27 b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 2a38A 194 41.75 2qkiB 188 42.56 3hhrB 203 42.58 b.1.2.1,b.1.2.1 22005,22006 1cidA 177 43.18 b.1.1.1,b.1.1.3 19740,21679 2pz4A 239 43.41 1w24A 182 43.49 d.159.1.7 120579 1ti6B 274 43.77 b.3.5.1,d.58.1.5 106976,106977 3jz7A 214 45.01 2kdgA 100 45.66 1bquA 215 45.76 b.1.2.1,b.1.2.1 22066,22067 2j6gA 266 45.83 2v5mA 388 46.14 3hrzB 252 48.69 2ag4A 164 48.74 b.95.1.1 126717 3dsmA 328 49.71 2wv3A 190 50.41 3f7rA 249 50.82 2bk8A 97 52.88 3gypA 261 53.37 2oxgA 108 53.80 2q86B 254 55.04 b.1.1.1,b.1.1.2 150120,150121 3cl5A 377 55.77 3gldA 295 58.24 3k6fA 100 59.08 2h41A 95 59.58 2vzsA 1032 60.53 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 153727,153728,153729,153730,153731 3ci0J 163 63.13 d.24.1.5 156658 1npeA 267 63.74 b.68.5.1 92032 3hhsA 694 64.69 2h14A 317 65.08 1epfA 191 65.78 b.1.1.4,b.1.1.4 21694,21695 3m7aA 140 66.24 1f6fB 210 66.67 b.1.2.1,b.1.2.1 22033,22034 1jmxB 349 67.09 b.69.2.2 66906 2pndA 119 67.14 2ghsA 326 67.16 b.68.6.1 135209 2wp3T 102 67.22 2qsvA 220 68.12 2akrA 285 68.45 b.1.1.2,d.19.1.1 126931,126932 2b3nA 159 68.93 d.38.1.4 127792 1kmtA 141 71.57 b.1.18.8 77442 1a64A 97 71.73 b.1.1.1 19750 1gl4B 98 72.22 b.1.1.4 65288 3lk41 286 74.03 3lndA 207 75.29 3fssA 237 75.69 1cdcA 99 76.85 b.1.1.1 19746 1nkrA 201 79.52 b.1.1.4,b.1.1.4 21799,21800 3dr2A 305 79.77 2rb8A 104 80.69 1fjrA 195 81.86 b.102.1.1 59855 2fauA 341 81.94 3ivkB 213 82.59 2k7qA 191 83.26 2v05A 311 83.31 1g72A 573 84.60 b.70.1.1 27680 3l5hA 589 84.78 1cczA 171 85.82 b.1.1.1,b.1.1.3 19758,21683 2fcbA 173 87.66 b.1.1.4,b.1.1.4 21781,21782 3lqmA 201 88.41 1q7fA 286 89.89 b.68.9.1 96036