# List of top-scoring protein chains for t2k-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1l0qA 391 2.59e-13 b.1.3.1,b.69.2.3 77644,77645 2c4xA 260 2.53e-12 1b4rA 80 1.19e-05 1b4rA b.1.3.1 22072 1wgoA 123 1.53e-05 b.1.3.1 114618 2yrlA 102 4.30e-03 2kpnA 103 4.33e-01 3kg7A 293 7.24e-01 1tlk 154 7.69e-01 1tlk 3c12A 138 8.38e-01 1fhgA 154 8.38e-01 1tlk b.1.1.4 21706 3e0gA 483 1.14e+00 1v8hA 107 1.25e+00 b.1.18.19 119870 1cvsC 225 1.98e+00 1cvsC b.1.1.4,b.1.1.4 21726,21727 1fsoA 139 2.09e+00 1rhoA b.1.18.8 60007 1pguA 615 2.12e+00 b.69.4.1,b.69.4.1 88069,88070 2vluA 122 2.38e+00 2wjsA 608 3.00e+00 3mgaA 407 3.06e+00 2jllA 389 3.96e+00 2h7wA 131 4.04e+00 b.1.26.1 136225 3l5jA 288 4.51e+00 1fjgK 129 4.58e+00 1fjfK c.55.4.1 33733 2cuaA 135 4.63e+00 2cuaA b.6.1.2 23039 3l5iA 290 4.66e+00 2w0pA 94 5.10e+00 b.1.18.10 153738 3iswA 99 5.10e+00 2brqA 97 5.50e+00 b.1.18.10 129008 1je5A 206 5.55e+00 1je5A b.40.4.7 62909 2vqeK 129 5.83e+00 c.55.4.1 153435 2iwtA 125 5.88e+00 3l5hA 589 5.95e+00 2hxsA 178 6.11e+00 1ev2E 220 6.14e+00 1cvsC b.1.1.4,b.1.1.4 21738,21739 1wwcA 118 6.22e+00 1wwcA b.1.1.4 21778 1vjuA 309 6.38e+00 d.248.1.1 100835 3cjjA 219 7.17e+00 2uubK 129 7.90e+00 c.55.4.1 139942 3duiA 135 8.27e+00 2gfaA 119 8.28e+00 b.34.9.1,b.34.9.1 135089,135090 3grwA 241 8.63e+00 2zw2A 92 9.13e+00 1cfb 205 9.14e+00 1cfb 3fm2A 135 9.16e+00 1j83A 180 9.23e+00 b.18.1.12 66430 1cfbA 205 9.45e+00 b.1.2.1,b.1.2.1 21991,21992 1edqA 540 1.02e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 2qqrA 118 1.03e+01 b.34.9.1,b.34.9.1 151226,151227 1kmtA 141 1.04e+01 b.1.18.8 77442 1go4A 205 1.07e+01 d.135.1.1 70292 1zq1A 438 1.12e+01 b.38.3.1,c.88.1.1 125489,125490 2vfxA 206 1.13e+01 3isyA 120 1.14e+01 3imhA 338 1.17e+01 1oe8A 211 1.18e+01 a.45.1.1,c.47.1.5 86905,86906 3ejjX 289 1.27e+01 1dujA 187 1.28e+01 1dujA d.135.1.1 41449 2wk2A 540 1.37e+01 2hy5B 136 1.42e+01 c.114.1.1 136866 3eesA 153 1.47e+01 3d6tB 171 1.48e+01 1f6fB 210 1.51e+01 1axiB b.1.2.1,b.1.2.1 22033,22034 1bxvA 91 1.53e+01 1aac b.6.1.1 22875 2vn6A 151 1.53e+01 b.2.2.2 153332 1rhoA 145 1.61e+01 1rhoA b.1.18.8 21899 1rh5A 436 1.63e+01 f.41.1.1 97464 1wit 93 1.63e+01 1wit 1ctn 540 1.65e+01 1ctn 1k9tA 540 1.65e+01 b.1.18.2,c.1.8.5,d.26.3.1 77298,77299,77300 1g0dA 695 1.74e+01 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 60166,60167,60168,60169 2vxsH 225 1.75e+01 1xf1A 926 1.77e+01 2nnrA 110 1.85e+01 b.1.26.1 148321 1g1kA 143 1.85e+01 1aohA b.2.2.2 22404 2w9qA 87 1.89e+01 2q7nA 488 1.91e+01 1olmA 403 2.09e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 3b9eA 584 2.12e+01 1z82A 335 2.26e+01 1klqA 197 2.27e+01 d.135.1.1 68689 2wlzA 548 2.30e+01 1u58A 253 2.41e+01 b.1.1.2,d.19.1.1 144387,144388 3d48R 211 2.43e+01 b.1.2.1,b.1.2.1 157289,157290 1txnA 328 2.49e+01 d.248.1.1 112779 1f00I 282 2.51e+01 1f00I b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 2j01E 206 2.75e+01 b.43.3.2 145566 3d2fA 675 2.78e+01 8fabB 224 2.80e+01 1igtB b.1.1.1,b.1.1.2 19773,20883 2wb9A 211 2.81e+01 1yq5A 144 2.94e+01 1l6zA 216 2.94e+01 b.1.1.1,b.1.1.4 77770,77771 3f7rA 249 2.95e+01 1zx4A 192 3.03e+01 2h1tA 188 3.04e+01 b.178.1.1 147215 2v5sA 394 3.04e+01 3ejvA 179 3.05e+01 d.17.4.28 158181 2v64D 207 3.09e+01 1ejeA 192 3.10e+01 1ejeA b.45.1.2 25757 1i9zA 347 3.19e+01 1i9yA d.151.1.2 62102 3eifA 936 3.20e+01 2zdsA 340 3.28e+01 1y5oA 115 3.36e+01 b.55.1.9 122650 3kldA 384 3.43e+01 1i9yA 347 3.46e+01 1i9yA d.151.1.2 62101 2cveA 191 3.49e+01 d.14.1.11,d.58.11.2 130869,130870 3h51A 156 3.58e+01 3hr5B 226 3.61e+01 1q67A 231 3.62e+01 b.55.1.7 95960 1sfdA 105 3.66e+01 b.6.1.1 105480 2awgA 118 3.69e+01 3lluA 196 3.74e+01 1x24A 180 3.74e+01 2kl6A 114 3.79e+01 1pqzA 238 3.80e+01 b.1.1.2,d.19.1.1 104297,104298 1bxaA 105 3.82e+01 1aac b.6.1.1 22839 2h17A 181 3.82e+01 1zclA 180 3.96e+01 2iepA 192 3.97e+01 2zr1B 267 4.06e+01 1ds6B 180 4.07e+01 1rhoA b.1.18.8 21898 3f5bA 182 4.22e+01 1rhfA 182 4.26e+01 b.1.1.1,b.1.1.4 97469,97470 1t62A 166 4.26e+01 b.122.1.4 106541 2v8qA 157 4.33e+01 d.129.6.2 152781 2k7qA 191 4.35e+01 1axsB 221 4.38e+01 1mfa b.1.1.1,b.1.1.2 20201,21217 2x10A 545 4.46e+01 3ktzA 251 4.54e+01 2whxA 618 4.56e+01 1kcgC 178 4.57e+01 d.19.1.1 68440 2idqA 105 4.60e+01 1vm9A 111 4.64e+01 b.33.1.1 108886 1vjrA 271 4.73e+01 c.108.1.14 100832 2ov0A 105 4.87e+01 b.6.1.1 149033 2vc8A 84 4.87e+01 3fdrA 94 4.95e+01 1he7A 126 4.96e+01 1wwcA b.1.1.4 60970 3f7qA 234 4.98e+01 1aac 105 5.02e+01 1aac 1tk1A 260 5.09e+01 d.248.1.1 107066 1cwvA 492 5.14e+01 1cwvA b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 2z5wA 136 5.19e+01 3e0eA 97 5.32e+01 1sqsA 242 5.35e+01 c.23.5.5 98968 1b8rA 108 5.35e+01 1a75A a.39.1.4 17201 3h25A 226 5.43e+01 2ncm 99 5.46e+01 2ncm 2q3wA 111 5.52e+01 b.33.1.1 139813 1zvfA 176 5.53e+01 b.82.1.20 146029 2d7vA 162 5.59e+01 d.227.1.1 146468 2v5mA 388 5.67e+01 1iuzA 98 5.72e+01 b.6.1.1 22861 3f7pC 248 5.75e+01 1xdiA 499 5.85e+01 c.3.1.5,d.87.1.1 115160,115161 1id2A 106 5.87e+01 1aac b.6.1.1 62288 2bk8A 97 6.03e+01 2huhA 147 6.03e+01 b.7.5.1 147405 1f15B 218 6.06e+01 1f15B b.121.4.5 23321 1io1A 398 6.09e+01 1io1A e.32.1.1 62611 3es6B 118 6.15e+01 b.1.18.23 158195 3idgB 237 6.16e+01 1b9aA 108 6.23e+01 1a75A a.39.1.4 17204 1u9kA 114 6.28e+01 b.1.1.1 113244 1f97A 212 6.30e+01 1f97A b.1.1.1,b.1.1.4 19763,21764 2joqA 91 6.58e+01 d.58.54.2 148160 2zejA 184 6.70e+01 1u3eM 174 6.73e+01 d.4.1.3,d.285.1.1 107640,107641 1b8lA 108 6.82e+01 1a75A a.39.1.4 17199 1lg7A 182 6.86e+01 d.213.1.1 73888 1zj6A 187 7.29e+01 c.37.1.8 125145 1aonO 97 7.39e+01 b.35.1.1 24642 1mfqC 129 7.42e+01 a.36.1.1 79046 1q55A 880 7.43e+01 i.20.1.1 95862 2bzvA 181 7.44e+01 3bpoC 314 7.45e+01 1y12A 165 7.49e+01 b.157.1.1 122516 2x7lA 231 7.53e+01 1u07A 90 7.55e+01 d.212.1.2 112902 1itwA 741 7.57e+01 c.77.1.2 76793 1nycA 111 7.60e+01 b.61.2.2 92336 3fv3A 339 7.60e+01 1iq3A 110 7.68e+01 1iq3A a.39.1.6 62640 1tx4B 178 7.73e+01 1ctqA c.37.1.8 32045 2qxlA 658 7.75e+01 1bqkA 124 7.80e+01 b.6.1.1 22889 2hazA 105 7.81e+01 b.1.2.1 136303 1bqk 124 7.82e+01 1bqk 2zwrA 207 7.87e+01 2p3hA 101 7.98e+01 d.145.1.4 149177 2ux7A 122 7.98e+01