# List of top-scoring protein chains for T0590.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1l0qA 391 4.31e-17 b.1.3.1,b.69.2.3 77644,77645 2c4xA 260 7.28e-14 1b4rA 80 4.33e-05 1b4rA b.1.3.1 22072 1wgoA 123 7.90e-05 b.1.3.1 114618 2yrlA 102 1.62e-03 1qz1A 291 2.02e-01 b.1.1.4,b.1.1.4,b.1.1.4 96609,96610,96611 3ejjX 289 4.74e-01 4pazA 123 6.40e-01 b.6.1.1 22881 6pazA 123 8.71e-01 b.6.1.1 22886 2om5A 381 9.48e-01 1zoyC 140 1.13e+00 2jkwA 124 1.30e+00 1bqkA 124 1.32e+00 b.6.1.1 22889 1ur1A 378 1.92e+00 c.1.8.3 99804 2cncA 386 2.18e+00 1l3wA 546 2.37e+00 b.1.6.1,b.1.6.1,b.1.6.1,b.1.6.1,b.1.6.1 73553,73554,73555,73556,73557 2ux7A 122 3.12e+00 3b43A 570 3.17e+00 1q55A 880 3.63e+00 i.20.1.1 95862 1ncjA 215 4.11e+00 1edhA b.1.6.1,b.1.6.1 22196,22197 2qviA 215 4.28e+00 b.1.6.1,b.1.6.1 151388,151389 3jxaA 383 6.38e+00 3kldA 384 6.41e+00 2g2rB 219 6.60e+00 1cvsC 225 6.63e+00 1cvsC b.1.1.4,b.1.1.4 21726,21727 2kpnA 103 6.73e+00 1a6tB 217 6.84e+00 1igtB b.1.1.1,b.1.1.2 20249,21259 1ii4E 220 6.89e+00 1cvsC b.1.1.4,b.1.1.4 62404,62405 1evtC 225 7.22e+00 1cvsC b.1.1.4,b.1.1.4 21730,21731 3dvnB 230 7.71e+00 b.1.1.1,b.1.1.2 157896,157897 1pazA 123 7.91e+00 b.6.1.1 22878 1nbqA 209 8.13e+00 b.1.1.1,b.1.1.4 85532,85533 3dvgB 230 8.13e+00 b.1.1.1,b.1.1.2 157890,157891 1e0oB 219 8.66e+00 1cvsC b.1.1.4,b.1.1.4 21748,21749 1ev2E 220 8.74e+00 1cvsC b.1.1.4,b.1.1.4 21738,21739 3ixxG 221 9.54e+00 1djsA 216 9.77e+00 1cvsC b.1.1.4,b.1.1.4 21746,21747 1wlhA 311 9.87e+00 b.1.18.10,b.1.18.10,b.1.18.10 114728,114729,114730 3l5hA 589 1.01e+01 1pmyA 123 1.22e+01 b.6.1.1 22888 1cs6A 382 1.40e+01 1cs6A b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21760,21761,21762,21763 1iuzA 98 1.43e+01 b.6.1.1 22861 2vr5A 718 1.50e+01 1ik6A 369 1.67e+01 c.36.1.7,c.48.1.2 66174,66175 1ds6B 180 1.68e+01 1rhoA b.1.18.8 21898 2fdbP 220 1.80e+01 b.1.1.4,b.1.1.4 133298,133299 1iilE 220 1.82e+01 1cvsC b.1.1.4,b.1.1.4 62437,62438 2ncmA 99 1.84e+01 b.1.1.4 21703 2bz7A 102 1.87e+01 3eqnA 758 1.88e+01 2azqA 311 1.90e+01 2dzkA 109 1.94e+01 1sbsH 222 1.95e+01 1igtB b.1.1.1,b.1.1.2 20367,21359 3hftA 257 2.02e+01 1py0A 125 2.04e+01 b.6.1.1 111645 2zahA 331 2.16e+01 2ec8A 524 2.24e+01 1wpxA 421 2.28e+01 c.69.1.5 121156 3greA 437 2.32e+01 2qecA 204 2.34e+01 1l4dB 122 2.34e+01 d.15.5.1 77684 2vweE 219 2.39e+01 1qgvA 142 2.73e+01 1qgvA c.47.1.8 33056 1sraA 151 2.77e+01 a.39.1.3 17190 1l4zB 136 2.81e+01 d.15.5.1 77704 1je5A 206 2.82e+01 1je5A b.40.4.7 62909 3dmkA 816 2.91e+01 7pcyA 98 3.02e+01 b.6.1.1 22863 3cjjA 219 3.14e+01 3eoaB 220 3.16e+01 3eo9H 219 3.17e+01 1bz7B 217 3.20e+01 1igtB b.1.1.1,b.1.1.2 20403,21375 1cpyA 421 3.39e+01 c.69.1.5 34651 1pqnA 127 3.43e+01 c.47.1.8 95025 2w5xA 375 3.53e+01 1fsoA 139 3.54e+01 1rhoA b.1.18.8 60007 2w5vA 375 3.58e+01 1fn4B 218 3.69e+01 b.1.1.1,b.1.1.2 59886,59887 1epfA 191 3.87e+01 2ncm b.1.1.4,b.1.1.4 21694,21695 1ev12 254 3.89e+01 1aym2 2f8lA 344 3.90e+01 c.66.1.45 133132 1nunB 230 3.94e+01 b.1.1.4,b.1.1.4 80735,80736 2nujA 163 3.95e+01 d.38.1.1 138608 2v6eA 558 3.97e+01 2x0kA 338 4.08e+01 3bo0A 442 4.20e+01 3f8uB 401 4.31e+01 1witA 93 4.38e+01 b.1.1.4 21714 1ya5A 201 4.40e+01 1yq3C 141 4.51e+01 3a7rA 337 4.61e+01 3hi6H 220 4.64e+01 2o5xH 227 4.67e+01 2v9lA 274 4.77e+01 1t62A 166 4.85e+01 b.122.1.4 106541 1b2wH 220 4.88e+01 1igtB b.1.1.1,b.1.1.2 20307,21299 1uctA 218 4.93e+01 b.1.1.4,b.1.1.4 88467,88468 3imfA 257 4.95e+01 2iqaB 223 4.96e+01 3fv3A 339 5.10e+01 2hjhA 354 5.17e+01 3mt0A 290 5.22e+01 1e07A 642 5.25e+01 3haeG 212 5.30e+01 1sqsA 242 5.30e+01 c.23.5.5 98968 1czdA 228 5.31e+01 1b77A d.131.1.2,d.131.1.2 41374,41375 2a38A 194 5.34e+01 2v5yA 731 5.59e+01 1kdjA 102 5.59e+01 b.6.1.1 22864 1v8hA 107 5.60e+01 b.1.18.19 119870 3ggwB 217 5.63e+01 3hxjA 330 5.71e+01 2dm2A 110 5.72e+01 2vx7A 396 5.74e+01 1g0yR 312 5.79e+01 1itbB b.1.1.4,b.1.1.4,b.1.1.4 21723,21724,21725 1itbB 315 5.81e+01 1itbB b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 1iraY 319 5.85e+01 1itbB b.1.1.4,b.1.1.4,b.1.1.4 21717,21718,21719 3kstA 306 5.87e+01 2fbwC 141 6.10e+01 1pguA 615 6.15e+01 b.69.4.1,b.69.4.1 88069,88070 1jfmA 174 6.19e+01 d.19.1.1 66640 2vx5A 396 6.20e+01 3eesA 153 6.23e+01 2zqoA 130 6.23e+01 b.42.2.1 154765 2fjfB 227 6.31e+01 b.1.1.1,b.1.1.2 133579,133580 1pcsA 98 6.34e+01 b.6.1.1 22871 2yxrA 426 6.35e+01 3ef4A 124 6.48e+01 2zqnA 131 6.52e+01 b.42.2.1 154763 2yxqA 431 6.53e+01 3i9sA 183 6.57e+01 1fl5B 219 6.57e+01 b.1.1.1,b.1.1.2 65017,65018 2qscH 222 6.63e+01 3l5iA 290 6.90e+01 3l5jA 288 6.90e+01 3d0iE 179 6.99e+01 1m4kA 200 7.07e+01 b.1.1.4,b.1.1.4 84796,84797 2i6cA 160 7.20e+01 d.108.1.1 137095 2h88C 140 7.20e+01 2v9nA 274 7.26e+01 3dknA 430 7.27e+01 1ovzA 207 7.30e+01 b.1.1.4,b.1.1.4 87473,87474 1rhzA 436 7.40e+01 f.41.1.1 97495 1rh5A 436 7.40e+01 f.41.1.1 97464 1uwgH 225 7.44e+01 b.1.1.1,b.1.1.2 100115,100116 1bp3B 211 7.48e+01 1axiB b.1.2.1,b.1.2.1 22031,22032 1t04B 219 7.49e+01 b.1.1.1,b.1.1.2 112184,112185 1t3fB 220 7.49e+01 b.1.1.1,b.1.1.2 112230,112231 3d48R 211 7.51e+01 b.1.2.1,b.1.2.1 157289,157290 3h42H 238 7.53e+01 3hopA 272 7.55e+01 3hocA 272 7.55e+01 1j83A 180 7.58e+01 b.18.1.12 66430 2wfnA 278 7.65e+01 3d0hE 179 7.68e+01 3cmiA 171 7.69e+01 2e9wA 489 7.78e+01 1etzA 215 7.81e+01 8fabA b.1.1.1,b.1.1.2 20480,21444 2zdsA 340 7.81e+01 2otpA 196 7.82e+01 2v9gA 274 7.87e+01 2gjsA 176 7.92e+01 c.37.1.8 135287