# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1l0qA 392 3.071e-12 b.1.3.1 77644 b.69.2.3 77645 2c4xA 251 1.060e-08 1b4rA 81 3.325e-08 1b4rA b.1.3.1 22072 1dboA 482 1.050e-06 1dbgA b.80.1.4 28034 2yrlA 103 2.417e-03 2jpjA 40 2.457e-01 1g0yI 22 7.909e-01 k.19.1.1 46448 1scfA 120 2.518e+00 1exzA a.26.1.2 16873 2bvlA 544 2.657e+00 c.68.1.22 146219 1exzA 134 7.712e+00 1exzA a.26.1.2 16877 1lyqA 102 7.760e+00 b.1.18.17 78302 1jb0J 42 8.256e+00 1jb0J f.23.18.1 62827 1nznA 123 8.379e+00 a.118.8.1 92382 2adoA 195 8.807e+00 2q86A 190 1.221e+01 1wgoA 124 1.236e+01 b.1.3.1 114618 3cx2A 108 1.272e+01 2e7mA 114 1.296e+01 2ostA 149 1.390e+01 3gldA 295 1.415e+01 2gudA 122 1.424e+01 b.77.3.1 135732 2bnqD 204 1.481e+01 b.1.1.1 144996 b.1.1.2 144997 1axtH 219 1.503e+01 1igtB b.1.1.1 20305 b.1.1.2 21297 1adqH 226 1.556e+01 1igtB b.1.1.1 20273 b.1.1.2 21273 1ss6A 103 1.705e+01 d.245.1.1 112112 2agcA 163 1.774e+01 2az0A 71 1.784e+01 a.30.8.1 127578 1ux6A 336 1.988e+01 b.29.1.16 100145 g.75.1.1 100146 1af6A 422 2.047e+01 2mprA f.4.3.2 43772 2ncm 100 2.054e+01 2ncm 2c9qA 103 2.106e+01 b.1.18.17 130138 1fpoA 172 2.109e+01 1fpoA a.2.3.1 15693 a.23.1.1 16487 1a5fH 213 2.147e+01 1igtB b.1.1.1 20303 b.1.1.2 21295 2ov7A 135 2.179e+01 1jvrA 138 2.231e+01 a.61.1.2 18132 3jvfC 272 2.311e+01 1q0xH 216 2.388e+01 b.1.1.1 95517 b.1.1.2 95518 3m4wA 285 2.403e+01 1tit 90 2.509e+01 1tit 1afvH 221 2.670e+01 1mfa b.1.1.1 20131 b.1.1.2 21161 1kyaA 500 2.867e+01 b.6.1.3 73203 b.6.1.3 73204 b.6.1.3 73205 1wryA 122 2.936e+01 1vd8A 24 2.946e+01 2i5hA 179 2.976e+01 e.71.1.1 147513 1pz5B 221 2.996e+01 b.1.1.1 95403 b.1.1.2 95404 2yuzA 101 3.052e+01 1u6tA 122 3.105e+01 2kqrA 114 3.145e+01 1iygA 134 3.186e+01 a.118.8.1 76947 2q9oA 560 3.347e+01 b.6.1.3 150149 b.6.1.3 150150 b.6.1.3 150151 1daqA 72 3.459e+01 1daqA a.139.1.1 59113 1dr9A 201 3.573e+01 1dr9A b.1.1.1 19762 b.1.1.3 21684 2qf2A 614 3.573e+01 2q7nA 481 3.605e+01 2z16A 154 3.682e+01 1ohzB 57 3.735e+01 a.139.1.1 93044 1axsB 222 3.747e+01 1mfa b.1.1.1 20201 b.1.1.2 21217 2i15A 123 3.754e+01 a.291.1.1 147485 2ag4A 165 3.933e+01 b.95.1.1 126717 1unnC 112 3.952e+01 d.240.1.1 99680