# List of top-scoring protein chains for t2k.w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1l0qA 391 1.80e-14 b.1.3.1 77644 b.69.2.3 77645 2c4xA 260 4.65e-12 1b4rA 80 1.17e-05 1b4rA b.1.3.1 22072 1wgoA 123 1.34e-04 b.1.3.1 114618 2yrlA 102 1.22e-01 2kpnA 103 1.91e+00 2v5yA 731 2.14e+00 1fsoA 139 2.80e+00 1rhoA b.1.18.8 60007 1pguA 615 2.97e+00 b.69.4.1 88069 b.69.4.1 88070 1sqsA 242 3.28e+00 c.23.5.5 98968 2vluA 122 3.49e+00 3dvnB 230 3.84e+00 b.1.1.1 157896 b.1.1.2 157897 3dvgB 230 4.07e+00 b.1.1.1 157890 b.1.1.2 157891 3bgfC 212 4.18e+00 3f5bA 182 4.37e+00 1ofzA 312 4.66e+00 b.68.8.1 86978 3greA 437 4.74e+00 3ejjX 289 4.83e+00 1iucA 312 4.88e+00 b.68.8.1 90696 3ggwB 217 5.01e+00 3bz4B 217 5.01e+00 3lw9A 168 6.13e+00 3dmkA 816 6.39e+00 2c8iB 252 6.43e+00 1wpxA 421 6.57e+00 c.69.1.5 121156 1h8tB 262 6.62e+00 2hxsA 178 6.96e+00 1bz7B 217 7.32e+00 1igtB b.1.1.1 20403 b.1.1.2 21375 1dosA 358 7.40e+00 1dosA c.1.10.2 29175 1ueyA 127 7.54e+00 b.1.2.1 99285 1gynA 358 7.57e+00 c.1.10.2 83385 1nbqA 209 7.74e+00 b.1.1.1 85532 b.1.1.4 85533 2ji0A 138 8.07e+00 1ttnA 106 8.24e+00 d.15.1.1 119340 1ev12 254 8.74e+00 1aym2 1oopB 261 8.85e+00 2ri9A 475 9.78e+00 a.102.2.1 152057 1kktA 511 9.94e+00 a.102.2.1 68687 2v6eA 558 1.04e+01 3e0gA 483 1.04e+01 1hngA 176 1.05e+01 1cczA b.1.1.1 19752 b.1.1.3 21681 1cpyA 421 1.07e+01 c.69.1.5 34651 1j83A 180 1.07e+01 b.18.1.12 66430 3f49S 266 1.11e+01 1mqtB 261 1.12e+01 1fhgA 154 1.12e+01 1tlk b.1.1.4 21706 1zoyC 140 1.14e+01 3cnqS 266 1.14e+01 3es6B 118 1.15e+01 b.1.18.23 158195 3kdmB 225 1.16e+01 1ymhE 65 1.17e+01 2ee6A 105 1.17e+01 1ft3A 139 1.17e+01 1rhoA b.1.18.8 60020 1gnsA 263 1.21e+01 c.41.1.1 70289 1duiA 266 1.22e+01 1gci c.41.1.1 32530 2iwtA 125 1.26e+01 1sueA 266 1.27e+01 c.41.1.1 32520 2o3iA 405 1.29e+01 e.73.1.1 148577 2jkwA 124 1.29e+01 1suaA 266 1.31e+01 1gci c.41.1.1 32531 1spbS 266 1.34e+01 1gci c.41.1.1 32532 3jyvR 313 1.35e+01 1bqkA 124 1.37e+01 b.6.1.1 22889 3frxA 319 1.39e+01 1trjA 314 1.39e+01 2jhuA 138 1.40e+01 b.1.18.8 138323 2k9uA 119 1.41e+01 2bxwA 141 1.42e+01 1kmtA 141 1.42e+01 b.1.18.8 77442 1ajwA 145 1.44e+01 b.1.18.8 21905 1huwA 191 1.45e+01 a.26.1.1 16831 1tlkA 154 1.47e+01 b.1.1.4 21707 2jhtA 138 1.48e+01 1seqL 213 1.49e+01 2v64D 207 1.50e+01 1f97A 212 1.52e+01 1f97A b.1.1.1 19763 b.1.1.4 21764 1v8hA 107 1.53e+01 b.1.18.19 119870 1qvyA 139 1.53e+01 b.1.18.8 96449 3h2iA 397 1.58e+01 2jhzA 138 1.58e+01 1igcH 222 1.59e+01 1igtB b.1.1.1 20047 b.1.1.2 21089 2jhxA 138 1.59e+01 2hy5B 136 1.65e+01 c.114.1.1 136866 3h25A 226 1.66e+01 1rhoA 145 1.68e+01 1rhoA b.1.18.8 21899 3duiA 135 1.68e+01 1qe0A 420 1.73e+01 1adjA c.51.1.1 33186 d.104.1.1 40735 1ft0A 139 1.74e+01 1rhoA b.1.18.8 60018 1r6hA 172 1.82e+01 c.45.1.1 97150 1v3aA 173 1.82e+01 c.45.1.1 113499 3i9gH 222 1.83e+01 2crhA 138 1.83e+01 1dujA 187 1.89e+01 1dujA d.135.1.1 41449 1gl6A 436 1.95e+01 c.37.1.11 70259 1e9rA 437 1.95e+01 c.37.1.11 64827 1klqA 197 1.96e+01 d.135.1.1 68689 2qyfA 206 1.98e+01 1s2hA 206 1.98e+01 d.135.1.1 98385 1go4A 205 1.98e+01 d.135.1.1 70292 2vfxA 206 1.98e+01 2v64A 213 1.99e+01 d.135.1.1 152617 1y9jA 159 2.01e+01 1a6cA 513 2.03e+01 1a6cA b.121.4.2 23296 b.121.4.2 23297 b.121.4.2 23298 2jhwA 138 2.09e+01 1nj9A 212 2.12e+01 b.1.1.1 91897 b.1.1.2 91898 1ilqC 19 2.13e+01 2if7A 193 2.14e+01 1ilpC 18 2.14e+01 1t62A 166 2.18e+01 b.122.1.4 106541 2zgpA 167 2.18e+01 1b8rA 108 2.21e+01 1a75A a.39.1.4 17201 1cvsC 225 2.23e+01 1cvsC b.1.1.4 21726 b.1.1.4 21727 3gizH 222 2.24e+01 2wn6A 463 2.24e+01 1evtC 225 2.27e+01 1cvsC b.1.1.4 21730 b.1.1.4 21731 3kg7A 293 2.28e+01 2x49A 333 2.29e+01 3fv3A 339 2.29e+01 2eyvA 124 2.32e+01 d.93.1.1 132602 1sbsH 222 2.34e+01 1igtB b.1.1.1 20367 b.1.1.2 21359 1ikfH 228 2.34e+01 1igtB b.1.1.1 20033 b.1.1.2 21087 3h20A 323 2.35e+01 3hhrA 190 2.36e+01 1huw a.26.1.1 16835 3jxaA 383 2.37e+01 1doaB 219 2.38e+01 1rhoA b.1.18.8 21904 2zgkA 158 2.38e+01 1hwgA 191 2.39e+01 1huw a.26.1.1 16834 3kldA 384 2.39e+01 3ce1A 168 2.42e+01 2jhsA 138 2.43e+01 2ncmA 99 2.57e+01 b.1.1.4 21703 1c5cH 215 2.57e+01 1igtB b.1.1.1 20475 b.1.1.2 21439 2ux7A 122 2.59e+01 4pazA 123 2.59e+01 b.6.1.1 22881 1b9aA 108 2.60e+01 1a75A a.39.1.4 17204 1hh4D 204 2.67e+01 b.1.18.8 61039 1zq1A 438 2.67e+01 b.38.3.1 125489 c.88.1.1 125490 3kstA 306 2.69e+01 1i9jH 220 2.75e+01 b.1.1.1 71144 b.1.1.2 71145 2orbH 228 2.77e+01 b.1.1.2 149001 1nc2A 215 2.78e+01 b.1.1.1 91781 b.1.1.2 91782 1l7tH 221 2.83e+01 b.1.1.1 77799 b.1.1.2 77800 1xi0A 145 2.83e+01 2vzxA 229 2.86e+01 2zdsA 340 2.86e+01 1fstA 182 2.89e+01 1rhoA b.1.18.8 60008 1ik6A 369 2.89e+01 c.36.1.7 66174 c.48.1.2 66175 1e07A 642 2.90e+01 2zr1B 267 2.91e+01 2jf7A 532 2.95e+01 1qqhA 144 3.00e+01 1dtoA b.91.1.1 28404 2zgqA 167 3.05e+01 1kcgC 178 3.07e+01 d.19.1.1 68440 3lmjH 231 3.13e+01 2o5xH 227 3.15e+01 3dknA 430 3.20e+01 2yxqA 431 3.22e+01 1rh5A 436 3.22e+01 f.41.1.1 97464 3haeG 212 3.22e+01 1rhzA 436 3.22e+01 f.41.1.1 97495 3lzhA 301 3.23e+01 2zglA 167 3.25e+01 2zgoA 167 3.26e+01 1rzxA 98 3.31e+01 b.36.1.1 98236 3eesA 153 3.34e+01 1sjgA 112 3.35e+01 b.33.1.1 105647 2w0pA 94 3.35e+01 b.1.18.10 153738 2zguA 167 3.36e+01 1wejL 214 3.37e+01 8fabA b.1.1.1 20360 b.1.1.2 21352 2yxrA 426 3.40e+01 2brqA 97 3.41e+01 b.1.18.10 129008 3bo0A 442 3.42e+01 1a22A 191 3.43e+01 1huw a.26.1.1 16833 3bpoC 314 3.48e+01 2om5A 381 3.49e+01 2zwrA 207 3.49e+01 3iswA 99 3.50e+01 2vr5A 718 3.52e+01 1x8sA 102 3.55e+01 b.36.1.1 114967 2cuaA 135 3.57e+01 2cuaA b.6.1.2 23039 2fwlB 136 3.57e+01 b.6.1.2 134248 2q3wA 111 3.60e+01 b.33.1.1 139813 1vm9A 111 3.60e+01 b.33.1.1 108886 1yq3C 141 3.62e+01 1r4aA 165 3.63e+01 c.37.1.8 96986 1tueB 218 3.63e+01 b.91.1.1 107324 1wwcA 118 3.64e+01 1wwcA b.1.1.4 21778 3fo2B 229 3.66e+01 1m112 254 3.69e+01 1w72H 223 3.72e+01 b.1.1.1 114299 b.1.1.2 114300 2wjsA 608 3.73e+01 1ksrA 100 3.77e+01 b.1.18.10 21897 1ncwH 222 3.78e+01 b.1.1.1 85555 b.1.1.2 85556 2imgA 151 3.80e+01 1ruaH 222 3.81e+01 b.1.1.1 97855 b.1.1.2 97856 1ncjA 215 3.85e+01 1edhA b.1.6.1 22196 b.1.6.1 22197 1p7kB 224 3.86e+01 b.1.1.1 94289 b.1.1.2 94290 3eh5B 166 3.86e+01 1xmeB 168 3.86e+01 b.6.1.2 122144 f.17.2.1 122145 2qpeB 168 3.86e+01 b.6.1.2 151202 f.17.2.1 151203 2fr4B 230 3.90e+01 2qviA 215 3.96e+01 b.1.6.1 151388 b.1.6.1 151389 2op4L 212 3.96e+01 2ntfA 211 3.96e+01 1b8lA 108 3.97e+01 1a75A a.39.1.4 17199 1dfbH 229 3.98e+01 1igtB b.1.1.1 19811 b.1.1.2 20921 2fbwC 141 3.98e+01 3difB 229 3.99e+01 b.1.1.2 157749 1hguA 191 3.99e+01 a.26.1.1 16837