PFRMAT SS TARGET T0589 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 6 (1 EBGHTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0589.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 1183 METHOD MODEL 1 S C 0.785 N C 0.553 A T 0.462 M T 0.497 A T 0.523 K T 0.548 N T 0.498 D C 0.477 K C 0.436 I C 0.459 N C 0.573 F C 0.548 S C 0.639 T C 0.648 P C 0.561 S C 0.552 G T 0.427 F T 0.345 P H 0.278 E H 0.286 F H 0.323 L C 0.721 P H 0.434 S H 0.908 E H 0.916 K H 0.946 R H 0.965 L H 0.969 E H 0.980 L H 0.981 Y H 0.988 L H 0.990 L H 0.998 D H 0.997 T H 0.998 I H 0.999 R H 0.999 R H 0.996 V H 0.995 Y H 0.991 E H 0.979 S H 0.963 Y H 0.865 G C 0.930 F C 0.871 T E 0.513 P C 0.491 I C 0.700 E C 0.866 T C 0.697 P C 0.532 A E 0.381 V E 0.483 E E 0.396 R H 0.690 L H 0.779 E H 0.707 V H 0.694 L H 0.748 Q H 0.651 A H 0.542 K T 0.324 G T 0.346 N T 0.491 Q T 0.553 G T 0.536 D T 0.617 N T 0.422 I E 0.380 I E 0.600 Y E 0.712 G E 0.701 L E 0.659 E E 0.491 P E 0.331 I T 0.411 L T 0.479 P T 0.446 P C 0.406 N C 0.345 R H 0.372 Q H 0.497 A H 0.479 E E 0.397 K E 0.482 D E 0.577 K E 0.633 S E 0.601 G E 0.645 D T 0.522 T T 0.892 G T 0.938 S T 0.896 E C 0.422 A E 0.799 R E 0.869 A E 0.765 L E 0.676 K E 0.421 F C 0.543 D C 0.481 Q C 0.350 T H 0.414 V H 0.976 P H 0.993 L H 0.998 A H 1.000 A H 1.000 Y H 0.999 I H 0.998 A H 0.995 R H 0.982 H H 0.853 L H 0.347 N T 0.490 D T 0.524 L T 0.533 T C 0.672 F C 0.580 P C 0.600 F E 0.579 A E 0.871 R E 0.929 Y E 0.865 Q E 0.854 M E 0.659 D T 0.370 V T 0.436 V T 0.360 F E 0.363 R T 0.349 G T 0.442 E T 0.450 R C 0.519 A C 0.572 K C 0.515 D C 0.586 G C 0.529 R C 0.400 F E 0.505 R E 0.567 Q E 0.680 F E 0.754 R E 0.824 Q E 0.864 C E 0.652 D C 0.390 I E 0.331 D E 0.529 V E 0.720 V E 0.615 G C 0.381 R T 0.495 E T 0.566 K T 0.632 L T 0.731 S T 0.460 L H 0.625 L H 0.703 Y H 0.807 D H 0.887 A H 0.966 Q H 0.980 M H 0.992 P H 0.997 A H 0.991 I H 0.995 I H 0.998 T H 0.997 E H 0.995 I H 0.995 F H 0.994 E H 0.977 A H 0.960 V H 0.847 N C 0.894 I T 0.548 G T 0.694 D T 0.554 F E 0.933 V E 0.981 I E 0.982 R E 0.946 I E 0.795 N C 0.425 N C 0.425 R C 0.440 K C 0.410 V H 0.324 L H 0.649 T H 0.769 G H 0.844 F H 0.894 F H 0.921 Q H 0.904 S H 0.892 L H 0.873 N C 0.599 I C 0.674 S C 0.628 E H 0.526 T H 0.611 Q H 0.737 I H 0.911 K H 0.938 S H 0.961 C H 0.983 I H 0.994 S H 0.995 I H 0.993 I H 0.989 D H 0.980 N H 0.961 L H 0.911 E H 0.669 K H 0.538 I H 0.460 G C 0.667 E H 0.878 A H 0.925 K H 0.952 V H 0.972 K H 0.981 L H 0.985 E H 0.983 L H 0.954 E H 0.923 K H 0.759 E H 0.549 G C 0.728 I C 0.737 N C 0.749 P H 0.888 E H 0.920 Q H 0.951 T H 0.971 Q H 0.961 K H 0.933 I H 0.891 I H 0.890 D H 0.812 F H 0.499 V H 0.686 K H 0.581 I H 0.556 D H 0.443 G C 0.319 S T 0.420 V T 0.465 D T 0.495 D T 0.412 V H 0.677 L H 0.848 D H 0.900 K H 0.909 L H 0.917 K H 0.929 H H 0.916 L H 0.899 S H 0.763 Q H 0.538 T H 0.422 L H 0.419 P H 0.362 E H 0.343 S H 0.374 E H 0.524 Q H 0.521 F H 0.665 N H 0.902 L H 0.904 G H 0.925 V H 0.989 S H 0.993 E H 0.996 L H 0.998 E H 0.999 T H 0.997 V H 0.998 I H 0.999 T H 0.997 G H 0.997 V H 0.994 R H 0.984 N H 0.962 L H 0.860 G C 0.915 V C 0.766 P C 0.488 D T 0.603 K T 0.531 R C 0.417 F E 0.651 C E 0.859 I E 0.845 D E 0.553 L G 0.520 A G 0.523 I G 0.587 A T 0.346 R T 0.390 G T 0.375 L T 0.429 N T 0.431 Y T 0.446 Y T 0.397 T T 0.381 G E 0.354 T E 0.648 V E 0.943 Y E 0.978 E E 0.976 T E 0.959 T E 0.905 L E 0.576 I T 0.522 G T 0.623 H T 0.651 E T 0.553 A T 0.418 L E 0.335 G E 0.466 S E 0.615 I E 0.591 C E 0.420 S C 0.551 G C 0.449 G C 0.298 R C 0.326 Y H 0.481 E H 0.872 E H 0.967 L H 0.971 V H 0.967 G H 0.948 T H 0.924 F H 0.873 I C 0.615 G C 0.675 E C 0.575 K C 0.541 M C 0.547 P C 0.771 G E 0.546 V E 0.841 G E 0.839 I E 0.793 S E 0.749 I C 0.422 G H 0.407 L H 0.926 T H 0.972 R H 0.985 L H 0.994 I H 0.996 S H 0.994 R H 0.991 L H 0.987 L H 0.958 K H 0.870 A H 0.708 G C 0.693 I C 0.572 L C 0.444 N C 0.522 T C 0.513 L C 0.543 P C 0.520 P C 0.515 T C 0.614 P C 0.653 A C 0.668 Q C 0.626 V E 0.953 V E 0.991 V E 0.990 V E 0.976 N E 0.743 M C 0.752 Q C 0.719 D H 0.544 E H 0.685 L H 0.815 M H 0.922 P H 0.952 T H 0.946 Y H 0.967 L H 0.994 K H 0.996 V H 0.996 S H 0.998 Q H 0.998 Q H 0.997 L H 0.993 R H 0.989 Q H 0.957 A H 0.792 G C 0.933 L C 0.833 N E 0.614 V E 0.925 I E 0.949 T E 0.910 N E 0.635 F T 0.694 E T 0.812 K T 0.783 R T 0.530 Q C 0.560 L H 0.879 G H 0.966 K H 0.982 Q H 0.991 F H 0.992 Q H 0.995 A H 0.994 A H 0.990 D H 0.980 K H 0.949 Q H 0.885 G C 0.905 I C 0.875 R C 0.769 F E 0.961 C E 0.992 V E 0.994 I E 0.986 I E 0.841 G C 0.746 A H 0.792 D H 0.884 E H 0.854 A H 0.906 A H 0.925 A H 0.723 Q C 0.747 K C 0.726 S E 0.772 S E 0.893 L E 0.865 K E 0.751 D E 0.471 L T 0.550 Q T 0.533 S T 0.516 G C 0.509 E C 0.567 Q E 0.704 V E 0.834 E E 0.829 V E 0.605 A C 0.623 L H 0.789 A H 0.844 D H 0.882 L H 0.970 A H 0.997 E H 0.994 E H 0.994 I H 0.988 K H 0.970 R H 0.885 R H 0.763 L C 0.512 T C 0.973 END