# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1qazA 351 6.88e-21 1qazA a.102.3.1 18848 2fuqA 747 2.74e-03 3e7jA 749 3.28e-03 3a0oA 776 1.98e-02 1ia6A 441 5.81e-02 a.102.1.2 76738 1c3d 294 6.79e-02 1c3d 1gxmA 332 8.47e-02 a.102.5.1 76371 2a73B 991 9.28e-02 1kktA 511 2.38e-01 a.102.2.1 68687 1tf4A 605 3.19e-01 1tf4A a.102.1.2,b.2.2.2 18827,22393 2ri9A 475 5.38e-01 a.102.2.1 152057 3eu8A 430 6.89e-01 1itzA 675 9.26e-01 c.36.1.10,c.36.1.6,c.48.1.1 76797,76798,76799 2fokA 579 9.29e-01 2fokA a.4.5.12,a.4.5.12,a.4.5.12,c.52.1.12 16131,16132,16133,33323 1yo8A 634 9.46e-01 1ks8A 433 1.01e+00 a.102.1.2 77519 1fo3A 460 1.07e+00 1dl2A a.102.2.1 18845 1x9dA 538 1.12e+00 a.102.2.1 121810 1ut9A 609 1.13e+00 a.102.1.2,b.1.18.2 99912,99913 2g0dA 409 1.33e+00 a.102.6.1 147057 1h4rA 314 1.90e+00 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 2z0dA 357 2.40e+00 d.3.1.22 145769 1wu4A 396 2.49e+00 a.102.1.2 121272 3ituA 345 2.76e+00 1fokA 568 2.84e+00 2fokA a.4.5.12,a.4.5.12,a.4.5.12,c.52.1.12 16137,16138,16139,33325 3gzkA 537 3.14e+00 2wtgA 159 3.20e+00 2dm9A 198 3.41e+00 d.81.4.1 146544 3ez8A 537 3.66e+00 1hl2A 297 3.88e+00 c.1.10.1 83581 1nxcA 478 4.15e+00 a.102.2.1 92293 1n4qB 377 4.23e+00 a.102.4.3 91636 1vd5A 377 4.25e+00 a.102.1.7 108518 2wkjA 303 6.14e+00 2cmd 312 6.18e+00 2cmd 2cmdA 312 6.18e+00 c.2.1.5,d.162.1.1 30135,42102 2p4qA 497 6.90e+00 1rw2A 152 7.11e+00 a.118.19.1 97961 3g2eA 194 7.14e+00 2ahfA 377 7.62e+00 1w6kA 732 8.23e+00 a.102.4.2,a.102.4.2 114271,114272 1rwhA 757 8.29e+00 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1hcuA 503 8.30e+00 a.102.2.1 65796 2f62A 161 8.42e+00 c.23.14.1 133021 2fefA 294 8.63e+00 a.29.11.1,a.254.1.1 133343,133344 1qqyA 130 9.29e+00 3lzt d.2.1.2 36586 2cqsA 842 9.77e+00 1hzfA 367 1.06e+01 a.102.4.4 76731 2j78A 468 1.07e+01 c.1.8.4 138099 1fdyA 297 1.16e+01 1nal3 c.1.10.1 29071 2ns0A 85 1.18e+01 a.4.5.76 148381 1nal1 297 1.25e+01 1nal3 3hhpA 312 1.27e+01 3e6uA 411 1.30e+01 2kq2A 147 1.33e+01 3b98A 475 1.38e+01 2cy7A 396 1.40e+01 d.3.1.22 146431 1kwfA 363 1.47e+01 a.102.1.2 73078 1cem 363 1.70e+01 1cem 1g87A 614 1.74e+01 a.102.1.2,b.2.2.2 83275,83276 3k7xA 349 1.75e+01 1dbiA 280 1.78e+01 1gci c.41.1.1 32543 1nal3 297 1.80e+01 1nal3 2ayuA 417 1.87e+01 d.305.1.1 127571 3e9gA 130 1.95e+01 2ijqA 161 1.97e+01 a.246.2.1 137481 3kdwA 221 1.99e+01 1ef1A 294 2.11e+01 1ef1A a.11.2.1,b.55.1.5,d.15.1.4 16368,27003,37611 3fz0A 360 2.13e+01 3g6iA 204 2.13e+01 1mdoA 393 2.15e+01 c.67.1.4 79013 3isnD 427 2.17e+01 3c1jA 424 2.20e+01 3hvyA 427 2.23e+01 2r8wA 332 2.24e+01 2zblA 421 2.28e+01 1vctA 205 2.34e+01 a.7.12.1,d.286.1.1 119986,119987 2vpnA 316 2.42e+01 2vjxA 846 2.44e+01 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 153203,153204,153205,153206,153207 1k4tA 592 2.51e+01 a.2.8.1,d.163.1.2,e.15.1.1 77263,77264,77265 1kb9A 431 2.53e+01 d.185.1.1,d.185.1.1 77311,77312 3gyyA 341 2.55e+01 1ojxA 263 2.61e+01 c.1.10.1 93164 2fn9A 290 2.77e+01 1tfaA 329 2.82e+01 1nnt c.94.1.2 35880 2qhpA 296 2.84e+01 1i7gA 287 2.86e+01 a.123.1.1 71121 1e8xA 961 2.87e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19148,23183,37631,41711 1mb4A 370 2.95e+01 c.2.1.3,d.81.1.1 78908,78909 3f3fC 570 3.05e+01 1r49A 592 3.08e+01 a.2.8.1,d.163.1.2,e.15.1.1 96983,96984,96985 2pggA 774 3.11e+01 e.8.1.4 149462 1o6lA 337 3.14e+01 d.144.1.7 81092 1o6jA 150 3.19e+01 c.47.1.10 81089 2p54A 267 3.23e+01 a.123.1.1 139497 3a8yC 142 3.25e+01 3h7lA 586 3.34e+01 1jxhA 288 3.39e+01 c.72.1.2 67415 1ab8A 220 3.41e+01 1azsA d.58.29.1 39414 1zu2A 158 3.42e+01 a.118.8.1 125662 3dfzA 223 3.51e+01 1q2zA 120 3.55e+01 a.118.19.1 95656 1cv8 174 3.56e+01 1cv8 1cv8A 174 3.56e+01 d.3.1.1 37089 1i5gA 144 3.58e+01 1ewxA c.47.1.10 61784 2bkyX 89 3.66e+01 d.68.6.1 128717 1seuA 592 3.68e+01 a.2.8.1,d.163.1.2,e.15.1.1 118952,118953,118954 1cd0A 111 3.71e+01 8fabA b.1.1.1 20559 1rkxA 357 3.72e+01 c.2.1.2 97631 2sqcA 631 3.75e+01 2sqcA a.102.4.2,a.102.4.2 18854,18855 1x54A 434 3.76e+01 2cbnA 306 3.79e+01 d.157.1.7 130191 1clc 639 3.82e+01 1clc 1clcA 639 3.82e+01 a.102.1.2,b.1.18.2 18835,21872 1ay0A 680 3.90e+01 1trkA c.36.1.10,c.36.1.6,c.48.1.1 31823,31824,33100 2cc1A 262 4.09e+01 e.3.1.1 130211 1dloB 427 4.23e+01 1rthA e.8.1.2 43041 1qqfA 277 4.57e+01 1c3d a.102.4.4 18875 1uby 367 4.58e+01 1uby 1umqA 81 4.59e+01 a.4.1.12 99625 1h49A 512 4.60e+01 c.1.8.4 83477 1ezvA 430 4.60e+01 1be3A d.185.1.1,d.185.1.1 59541,59542 1vsvA 359 4.68e+01 3bemA 218 4.77e+01 3cx5A 431 4.84e+01 d.185.1.1,d.185.1.1 157076,157077 1v7wA 807 4.88e+01 a.102.1.4,b.30.5.3 108411,108412 3iszA 377 4.96e+01 3bjbA 207 5.05e+01 1h4lD 147 5.10e+01 a.74.1.1 70873 2kkzA 140 5.13e+01 1umpA 631 5.18e+01 a.102.4.2,a.102.4.2 99619,99620 3e9fA 121 5.21e+01 1z1lA 345 5.24e+01 1zh8A 340 5.26e+01 c.2.1.3,d.81.1.5 125077,125078 1e8yA 966 5.34e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 2cklA 108 5.41e+01 2gu2A 312 5.48e+01 c.56.5.7 147177 2wnhA 418 5.49e+01 1iicA 422 5.52e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 2z3qA 119 5.54e+01 a.26.1.2 154002 1h8pA 109 5.56e+01 g.14.1.2,g.14.1.2 70916,70917 1sn4A 64 5.78e+01 1aho g.3.7.1 44136 2hfsA 332 5.84e+01 1x1iA 752 5.90e+01 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1jcrB 437 6.03e+01 a.102.4.3 66507 3ik2A 517 6.06e+01 2bce 581 6.08e+01 2bce 1eg7A 557 6.17e+01 1eg7A c.37.1.10 32241 1trkA 680 6.20e+01 1trkA c.36.1.10,c.36.1.6,c.48.1.1 31803,31804,33090 1g0u1 266 6.28e+01 1rrmA 386 6.41e+01 e.22.1.2 105081 1idrA 136 6.42e+01 1dlyA a.1.1.1 62301 2nwbA 400 6.52e+01 1ualA 274 6.53e+01 c.116.1.4 88383 3mesA 424 6.57e+01 2rgmA 481 6.67e+01 2hzgA 401 6.77e+01 1wu3I 161 6.83e+01 a.26.1.3 114890 1u7gA 385 6.90e+01 f.44.1.1 107723 2je8A 848 6.98e+01 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 147998,147999,148000,148001,148002 3ce6A 494 6.99e+01 2q4zA 312 7.01e+01 1enfA 212 7.17e+01 3seb b.40.2.2,d.15.6.1 25198,37787 1k92A 455 7.17e+01 c.26.2.1,d.210.1.1 68325,68326 1azsB 212 7.23e+01 1azsA d.58.29.1 39423 1p3dA 475 7.39e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1mjoA 104 7.41e+01 1cmbA a.43.1.5 17466 1g6sA 427 7.46e+01 1eps d.68.2.2 39584 3b5gA 111 7.55e+01 2bceA 585 7.60e+01 c.69.1.1 34625 2okxA 956 7.69e+01 3g14A 193 7.73e+01 2q07A 306 7.74e+01 b.122.1.1,c.18.1.4,d.17.6.5 149981,149982,149983 1n62C 288 7.83e+01 d.87.2.1,d.145.1.3 80094,80095 1vfjA 116 7.84e+01 d.58.5.1 113637 2vr4A 846 7.91e+01 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 153495,153496,153497,153498,153499